The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]

  • See Evidence submitted by expert panel for details.

Variant: NM_000257.3(MYH7):c.4354-7C>T

CA014888

43011 (ClinVar)

Gene: MYH7
Condition: hypertrophic cardiomyopathy
Inheritance Mode: Autosomal dominant inheritance
UUID: f7c40884-cfcd-4962-978e-647248238679
Approved on: 2021-06-23
Published on: 2021-12-09

HGVS expressions

NM_000257.3:c.4354-7C>T
NM_000257.3(MYH7):c.4354-7C>T
NC_000014.9:g.23417325G>A
CM000676.2:g.23417325G>A
NC_000014.8:g.23886534G>A
CM000676.1:g.23886534G>A
NC_000014.7:g.22956374G>A
NG_007884.1:g.23337C>T
ENST00000355349.4:c.4354-7C>T
ENST00000355349.3:c.4354-7C>T
NR_126491.1:n.765G>A
NM_000257.4:c.4354-7C>T
NM_000257.4(MYH7):c.4354-7C>T

Uncertain Significance

Met criteria codes 1
BP4
Not Met criteria codes 10
BA1 BS4 BS1 BP7 PS2 PS4 PP1 PP3 PM6 PM2

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Cardiomyopathy VCEP
The NM_000257.4(MYH7):c.4354-7C>T variant has been reported in 3 individuals with HCM (Invitae pers. comm; LMM pers. comm.). This variant has also been identified in 0.004% (FAF 95% CI; 4/34362) of Latino/Admixed American chromosomes by gnomAD v2.1.1 (https://gnomad.broadinstitute.org). Since the MYH7 specifications state that PS4 is only applicable if the variant is absent or rare in large population studies, the PS4 criterion was not applied (Kelly 2018 PMID:29300372). This variant is located in the 3' splice region and computational tools do not predict an impact on splicing, though this information is not predictive enough to rule out pathogenicity (BP4). In summary, due to insufficient evidence, this variant is classified as uncertain significance for hypertrophic cardiomyopathy in an autosomal dominant manner. MYH7-specific ACMG/AMP criteria applied (PMID:29300372): BP4.
Met criteria codes
BP4
splicing tools predict no effects
Not Met criteria codes
BA1
4/34562 Latino/Admixed American chromosomes
BS4
not available
BS1
4/34562 Latino/Admixed American chromosomes
BP7
not silent variant
PS2
no de novo occurrences
PS4
3 probands with HCM (2LMM, 1 inviate) pm2 not invoked, PS$ does not apply
PP1
no segs
PP3
splicing tools predict no effect
PM6
no denovo occurrences
PM2
4/34562 Latino/Admixed American chromosomes FAF 0.004%
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