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Variant: NM_000138.5(FBN1):c.7540G>A (p.Gly2514Arg)

CA017250

178034 (ClinVar)

Gene: FBN1
Condition: Marfan syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: b03fd0bc-a7b0-4309-afa3-e4e8a053be65
Approved on: 2023-09-28
Published on: 2023-09-28

HGVS expressions

NM_000138.5:c.7540G>A
NM_000138.5(FBN1):c.7540G>A (p.Gly2514Arg)
NC_000015.10:g.48421982C>T
CM000677.2:g.48421982C>T
NC_000015.9:g.48714179C>T
CM000677.1:g.48714179C>T
NC_000015.8:g.46501471C>T
NG_008805.2:g.228807G>A
ENST00000682170.1:n.1721G>A
ENST00000682767.1:n.837G>A
ENST00000316623.10:c.7540G>A
ENST00000674301.1:c.2706G>A
ENST00000316623.9:c.7540G>A
ENST00000559133.5:c.2909G>A
NM_000138.4:c.7540G>A
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Pathogenic

Met criteria codes 5
PM2_Supporting PP1_Strong PS4 PP2 PP4
Not Met criteria codes 1
PP3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
The NM_000138.5 c.7540G>A is a missense variant in FBN1 predicted to cause a substitution of a glycine acid by arginine at amino acid 2514 (p.Gly2514Arg), located within a calcium binding EGF-like (cbEGF) domain of the protein. This variant was found in a proband with thoracic aortic aneurysm and ectopia lentis which is a highly specific phenotype for Marfan syndrome (internal data-Bichat) (PP4). This variant has been reported in at least 4 individuals with thoracic aortic aneurysm and/or clinical features of Marfan syndrome (PMID 26272055, 19720936, 11875032, Laboratory for Molecular Medicine ClinVarentry), and in at least 3 individuals clinically diagnosed with Marfan syndrome (PMID 33483584, 28468757, Rurali et al. 2019) (PS4). It was also found to segregate with the disease in at least 5 affected family members from multiple families (Rurali et al. 2019, Laboratory for Molecular Medicine ClinVar entry, internal data) (PP1_Strong). This variant is not present in gnomAD (PM2_sup; https://gnomad.broadinstitute.org/ version 2.1.1). Computational prediction tools and conservation analysis suggest that this variant may impact the protein (REVEL: 0.945) (PP3). The constraint z-score for missense variants affecting FBN1 is 5.06 (PP2). In summary, this variant meets criteria to be classified as pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PS4, PP1_Strong, PM2_Sup, PP2, PP3, PP4
Met criteria codes
PM2_Supporting
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PP1_Strong
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PS4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PP2
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PP4
1 internal proband meeting revised Ghent criteria
Not Met criteria codes
PP3
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Curation History
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