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Variant: NM_000138.5(FBN1):c.8080C>T (p.Arg2694Ter)

CA017544

163461 (ClinVar)

Gene: FBN1
Condition: Marfan syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: 83c08467-6b08-4c83-98b3-504c8959129d
Approved on: 2023-09-28
Published on: 2023-09-28

HGVS expressions

NM_000138.5:c.8080C>T
NM_000138.5(FBN1):c.8080C>T (p.Arg2694Ter)
NC_000015.10:g.48412715G>A
CM000677.2:g.48412715G>A
NC_000015.9:g.48704912G>A
CM000677.1:g.48704912G>A
NC_000015.8:g.46492204G>A
NG_008805.2:g.238074C>T
ENST00000682158.1:n.1461C>T
ENST00000682170.1:n.2261C>T
ENST00000682767.1:n.1377C>T
ENST00000316623.10:c.8080C>T
ENST00000674301.1:c.3246C>T
ENST00000316623.9:c.8080C>T
ENST00000559133.5:c.3449C>T
ENST00000561429.1:n.335C>T
NM_000138.4:c.8080C>T
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Pathogenic

Met criteria codes 3
PM2_Supporting PM6 PVS1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
The NM_00138 c.8080C>T, is a nonsense variant in FBN1 which is predicted to result in a premature stop codon at position 2694, and likely results in an absent or disrupted protein product (PVS1). This variant was found in a proband with thoracic aortic aneurysm, ectopia lentis, and a systemic score of 10, which is a highly specific phenotype for Marfan syndrome (internal data) (PP4). The variant has been identified as a de novo occurrence, without confirmation of paternity and maternity, in one individual with highly specific phenotype and in one individual with a phenotype consistent with the gene but not highly specific (Internal data- Bichat) (PM6). This variant was also found in a proband with ectopia lentis, thoraic aortic aneurysm, and skeletal features, and was found to segregate with the disease in 1 affected family member (internal data, John Hopkins). This variant has been reported 9 times in ClinVaras pathogenic (Variation ID: 163461). At least 20 other probands with a clinical diagnosis of Marfan syndrome and/or clinical features of Marfan syndrome carry the same variant (PMID 17680538, 19293843, 19839986, 24199744, 26787436, 14695540, 18435798, 26133393, internal data, PS4). This variant is not present in gnomAD (PM2_sup; https://gnomad.broadinstitute.org/ version 2.1.1). In summary, this variant meets criteria to be classified as pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PVS1, PS4, PM6, PM2_Sup, PP4.
Met criteria codes
PM2_Supporting
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM6
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PVS1
within second last exon, not last 50 bp
Curation History
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