The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
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  • See Evidence submitted by expert panel for details.

Variant: NM_000138.5(FBN1):c.8326C>T (p.Arg2776Ter)

CA017692

16439 (ClinVar)

Gene: FBN1
Condition: Marfan syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: 7c3a40d5-a4c6-44f3-bb9c-07cc1c45691c
Approved on: 2024-08-22
Published on: 2024-08-22

HGVS expressions

NM_000138.5:c.8326C>T
NM_000138.5(FBN1):c.8326C>T (p.Arg2776Ter)
NC_000015.10:g.48411280G>A
CM000677.2:g.48411280G>A
NC_000015.9:g.48703477G>A
CM000677.1:g.48703477G>A
NC_000015.8:g.46490769G>A
NG_008805.2:g.239509C>T
ENST00000559133.6:c.*1134C>T
ENST00000674301.2:c.*1839C>T
ENST00000682158.1:n.1707C>T
ENST00000682170.1:n.2507C>T
ENST00000682767.1:n.1623C>T
ENST00000316623.10:c.8326C>T
ENST00000674301.1:c.3492C>T
ENST00000316623.9:c.8326C>T
ENST00000559133.5:c.3695C>T
ENST00000561429.1:n.581C>T
NM_000138.4:c.8326C>T
More

Pathogenic

Met criteria codes 6
PM2_Supporting PS4 PS3 PP4 PP1_Strong PVS1_Strong
Not Met criteria codes 8
BA1 BS2 BS4 BS3 BS1 PS1 PM6 PM1

Evidence Links 1

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
The NM_00138 c.8326C>T, is a nonsense variant in FBN1 that occurs in the last exon of the gene and is not expected to undergo nonsense-mediated decay but is expected to disrupt the last 96 amino acids of the protein. Premature terminations in the C-terminus are considered to be deleterious (PVS1_Strong; PMID 24982166, 12161601, 7911051, 21034599). In an in-vitro microfibril assay, this variant was reported to result in intracellular retention of the protein (PMID 24982166; PS3). This variant was found in a proband with aortic aneurysm and dissection, ectopia lentis, and skeletal features, who met revised Ghent criteria, which is a highly specific phenotype for Marfan syndrome (MFS) (Internal lab data; PP4). This variant has been reported 10 times in ClinVar, nine as pathogenic and once as likely pathogenic (Variation ID: 16439). Several other probands with a clinical diagnosis of Marfan syndrome and/or clinical features of Marfan syndrome carry the same variant (internal lab data, PMID 9338581, 31098894, 31730815, 33059708, 25907466, 19293843, 34916231; PS4). In one individual with aortic dissection and myopia, this variant was reported to be de novo without confirmation of parental relationships (PMID 31098894; 0.25 points). In two families with MFS, this variant was found to segregate with disease in five affected family members (internal lab data; PP1_Strong). This variant is present in in 10/24982 (0.04%) of alleles tested from the Finnish population in gnomAD and did not pass the quality control criteria in the genome subset (PM2_Sup; https://gnomad.broadinstitute.org/ v2.1.1). In summary, this variant meets criteria to be classified as pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PVS1_Strong, PS4, PS3, PP1_Strong, PM2_Sup, PP4
Met criteria codes
PM2_Supporting
V2.1.1: 11/282658 (0.004%): Present in 10/24982 (0.04%) of Finnish individuals (not used for scoring PM2) *Failed QC: random forest filters in genome
PS4
> 4 points
PS3
PP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PP1_Strong
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PVS1_Strong
Stop-gained; PTC at position 2776, in the last exon- not predicted to undergo NMD
Not Met criteria codes
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS2
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS4
Parents not tested
BS3
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM6
0.25 points “high heterogeneity”- 0.25 pts: does not meet criteria
PM1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Curation History
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