The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_000138.5(FBN1):c.8378A>G (p.Tyr2793Cys)

CA017709

42443 (ClinVar)

Gene: FBN1
Condition: Marfan syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: 30b5d535-ad93-432e-bbe4-ab294293c02f
Approved on: 2024-08-22
Published on: 2024-08-22

HGVS expressions

NM_000138.5:c.8378A>G
NM_000138.5(FBN1):c.8378A>G (p.Tyr2793Cys)
NC_000015.10:g.48411228T>C
CM000677.2:g.48411228T>C
NC_000015.9:g.48703425T>C
CM000677.1:g.48703425T>C
NC_000015.8:g.46490717T>C
NG_008805.2:g.239561A>G
ENST00000559133.6:c.*1186A>G
ENST00000674301.2:c.*1891A>G
ENST00000682158.1:n.1759A>G
ENST00000682170.1:n.2559A>G
ENST00000682767.1:n.1675A>G
ENST00000316623.10:c.8378A>G
ENST00000674301.1:c.3544A>G
ENST00000316623.9:c.8378A>G
ENST00000559133.5:c.3747A>G
ENST00000561429.1:n.633A>G
NM_000138.4:c.8378A>G
More

Likely Pathogenic

Met criteria codes 5
PS4_Moderate PP4 PP3 PP2 PM2_Supporting
Not Met criteria codes 2
PM1 PM5

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
The NM_00138 c.8378A>G is a missense variant in FBN1 predicted to cause a substitution of a tyrosine by cysteine at amino acid 2793 (p.Tyr2793Cys), located within the C-terminal region of the protein. This variant was found in a proband with thoracic aortic dissection and a systemic score >7, which is a highly specific phenotype for Marfan syndrome (MFS) (Internal lab data, PP4). This variant has been reported three times in ClinVar: once as likely pathogenic, 2 times as uncertain significance (Variation ID: 42443). This variant has also been identified in at least 1 individual with a clinical diagnosis of MFS, as well as in individuals with clinical features of MFS (PMID 17663468, 34916231, 37558401, Invitae ClinVar, PS4_Moderate). A different missense variant at this position, c.8377T>C p.Tyr2793His, has previously been reported in individuals with MFS and/or MFS-related features (PMID 21542060, ClinVar), however the p.Tyr2793His variant has not yet been reviewed the FBN1 Variant Curation Expert Panel. This variant is not present in gnomAD (PM2_sup; https://gnomad.broadinstitute.org/ v2.1.1). Computational prediction tools and conservation analysis suggest that this variant may impact the protein (REVEL: 0.967, PP3). The constraint z-score for missense variants affecting FBN1 is 8.18 (PP2; https://gnomad.broadinstitute.org/ v4.0.0). In summary, this variant meets criteria to be classified as likely pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PS4_Moderate, PM2_Sup, PP2, PP3, PP4.
Met criteria codes
PS4_Moderate
2.5 points
PP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PP3
REVEL score: 0.967
PP2
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM2_Supporting
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Not Met criteria codes
PM1
Cys-creating- not present within a Hybrid, TB, or cb-EGF-like domain
PM5
c.8377T>C p.Tyr2793His- Not yet reviewed by ClinGen FBN1 VCEP
Curation History
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