The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No CSPEC related information was provided by the message!

  • See Evidence submitted by expert panel for details.

Variant: NM_001042723.2(RYR1):c.13979_13980delinsCT (p.Leu4660Pro)

CA024095

133055 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia of anesthesia
Inheritance Mode: Autosomal dominant inheritance
UUID: c2e16786-d7f2-4419-b8fd-4e51876ae437
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_001042723.2:c.13979_13980delinsCT
NM_001042723.2(RYR1):c.13979_13980delinsCT (p.Leu4660Pro)
NC_000019.10:g.38572266_38572267delinsCT
CM000681.2:g.38572266_38572267delinsCT
NC_000019.9:g.39062906_39062907delinsCT
CM000681.1:g.39062906_39062907delinsCT
NC_000019.8:g.43754746_43754747delinsCT
NG_008866.1:g.143567_143568delinsCT
ENST00000593677.2:n.930_931delinsCT
ENST00000688602.1:n.2327_2328delinsCT
ENST00000689936.1:n.2299_2300delinsCT
ENST00000359596.8:c.13994_13995delinsCT
ENST00000355481.8:c.13979_13980delinsCT
ENST00000359596.7:n.13994_13995delinsCT
ENST00000360985.7:c.13976_13977delinsCT
NM_000540.2:c.13994_13995delinsCT
NM_001042723.1:c.13979_13980delinsCT
NM_000540.3:c.13994_13995delinsCT
NM_000540.3(RYR1):c.13994_13995delinsCT (p.Leu4665Pro)

Uncertain Significance

Met criteria codes 2
PM6_Supporting PM1_Supporting
Not Met criteria codes 1
PS4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of leucine with proline at codon 4665 of the RYR1 protein, p.(Leu4665Pro), c.13994_13995delTCinsCT. This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported as de novo in one individual with a personal history of a malignant hyperthermia reaction. This individual did not have a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (PMID: 17483490), PS4 was not met, PM6_supporting was implemented. No functional studies were identified for this variant. This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Sup (PMID: 21118704). No REVEL score was available for this variant. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PM6_Supporting, PM1_Supporting.
Met criteria codes
PM6_Supporting
This variant has been reported as de novo in one individual with a personal history of a malignant hyperthermia reaction. This individual did not have a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (PMID: 17483490), PS4 was not met, PM6_supporting was implemented.
PM1_Supporting
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Sup (PMID: 21118704).
Not Met criteria codes
PS4
This variant has been reported as de novo in one individual with a personal history of a malignant hyperthermia reaction. This individual did not have a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (PMID: 17483490), PS4 was not met, PM6_supporting was implemented.
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.