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Variant: NM_000540.2(RYR1):c.14201G>A (p.Gly4734Glu)

CA024112

133059 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia of anesthesia
Inheritance Mode: Autosomal dominant inheritance
UUID: 29a2f628-136f-4ef4-a2b6-ae1e6cc296ed
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_000540.2:c.14201G>A
NM_000540.2(RYR1):c.14201G>A (p.Gly4734Glu)
NC_000019.10:g.38577946G>A
CM000681.2:g.38577946G>A
NC_000019.9:g.39068586G>A
CM000681.1:g.39068586G>A
NC_000019.8:g.43760426G>A
NG_008866.1:g.149247G>A
ENST00000593677.2:n.1137G>A
ENST00000688602.1:n.2534G>A
ENST00000689936.1:n.2506G>A
ENST00000359596.8:c.14201G>A
ENST00000355481.8:c.14186G>A
ENST00000359596.7:n.14201G>A
ENST00000360985.7:c.14183G>A
NM_001042723.1:c.14186G>A
NM_000540.3:c.14201G>A
NM_001042723.2:c.14186G>A
NM_000540.3(RYR1):c.14201G>A (p.Gly4734Glu)

Uncertain Significance

Met criteria codes 3
PP3_Moderate PM1_Supporting PS4_Supporting
Not Met criteria codes 1
PS3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of glycine with glutamic acid at codon 4734 of the RYR1 protein, p.(Gly4734Glu). This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in an individual with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Supporting (PMID: 30236257). A functional study using [3H]ryanodine in HEK293 cells showed altered activity of this variant compared to wild-type but this study did not meet the VCEP criteria for a well-established functional study (PMID:27558158). This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Sup (PMID: 21118704). A REVEL score >0.85 (0.871) supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PS4_Supporting, PM1_Supporting, PP3_Moderate.
Met criteria codes
PP3_Moderate
A REVEL score >0.85 (0.871) supports a pathogenic status for this variant, PP3_Moderate.
PM1_Supporting
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Sup (PMID: 21118704).
PS4_Supporting
This variant has been reported in an individual with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Supporting (PMID: 30236257).
Not Met criteria codes
PS3
A functional study using [3H]ryanodine in HEK293 cells showed altered activity of this variant compared to wild-type but this study did not meet the VCEP criteria for a well-established functional study (PMID:27558158).
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