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Variant: NM_000540.2(RYR1):c.14209C>T (p.Arg4737Trp)

CA024116

133060 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia of anesthesia
Inheritance Mode: Autosomal dominant inheritance
UUID: 0bcab7e3-e758-4cbb-bea3-941d6595ee7c
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_000540.2:c.14209C>T
NM_000540.2(RYR1):c.14209C>T (p.Arg4737Trp)
NC_000019.10:g.38577954C>T
CM000681.2:g.38577954C>T
NC_000019.9:g.39068594C>T
CM000681.1:g.39068594C>T
NC_000019.8:g.43760434C>T
NG_008866.1:g.149255C>T
ENST00000593677.2:n.1145C>T
ENST00000688602.1:n.2542C>T
ENST00000689936.1:n.2514C>T
ENST00000359596.8:c.14209C>T
ENST00000355481.8:c.14194C>T
ENST00000359596.7:n.14209C>T
ENST00000360985.7:c.14191C>T
NM_001042723.1:c.14194C>T
NM_000540.3:c.14209C>T
NM_001042723.2:c.14194C>T
NM_000540.3(RYR1):c.14209C>T (p.Arg4737Trp)

Likely Pathogenic

The Expert Panel has overridden the computationally generated classification - "Uncertain Significance - Insufficient Evidence"
Met criteria codes 5
PP3_Moderate PS4_Moderate PM5_Supporting PM1_Supporting PP1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of arginine with tryptophan at codon 4737 of the RYR1 protein, p.(Arg4737Trp). This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in five individuals with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Moderate (PMID: 16163667, 26631338, 30236257, VCEP participating clinical laboratory). This variant segregates with MHS in 4 individuals, PP1 (PMID:26631338, 12208234). No functional studies were identified for this variant. This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Sup (PMID: 21118704). A REVEL score >0.85 (.882) supports a pathogenic status for this variant, PP3_Moderate. Another variant has been assessed as likely pathogenic occurs at this codon, p.(Arg4737Gln), PM5_Supporting (PMID: 23460944). This variant has been classified as Likely Pathogenic. Criteria implemented: PS4_Moderate, PM1_Supporting, PM5_Supporting, PP1, PP3_moderate.
Met criteria codes
PP3_Moderate
A REVEL score >0.85 (.882) supports a pathogenic status for this variant, PP3_Moderate.
PS4_Moderate
This variant has been reported in five individuals with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Moderate (PMID: 16163667, 26631338, 30236257, VCEP participating clinical laboratory).
PM5_Supporting
Another variant has been assessed as likely pathogenic occurs at this codon, p.(Arg4737Gln), PM5 (PMID: 23460944).
PM1_Supporting
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Sup (PMID: 21118704).
PP1
This variant segregates with MHS in 4 individuals, PP1_Supporting (PMID:26631338, 12208234).
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