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Variant: NM_000540.3(RYR1):c.14497C>T (p.His4833Tyr)

CA024158

133072 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: a49fc6e3-69e0-4296-b6bb-c0ca8107aa35
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_000540.3:c.14497C>T
NM_000540.3(RYR1):c.14497C>T (p.His4833Tyr)
NC_000019.10:g.38580114C>T
CM000681.2:g.38580114C>T
NC_000019.9:g.39070754C>T
CM000681.1:g.39070754C>T
NC_000019.8:g.43762594C>T
NG_008866.1:g.151415C>T
ENST00000593677.2:n.1433C>T
ENST00000688602.1:n.2830C>T
ENST00000689936.1:n.2802C>T
ENST00000359596.8:c.14497C>T
ENST00000355481.8:c.14482C>T
ENST00000359596.7:n.14497C>T
ENST00000360985.7:c.14479C>T
NM_000540.2:c.14497C>T
NM_001042723.1:c.14482C>T
NM_001042723.2:c.14482C>T
More

Likely Pathogenic

The Expert Panel has overridden the computationally generated classification - "Uncertain Significance - Insufficient Evidence"
Met criteria codes 5
PS3_Moderate PP3_Moderate PM1_Supporting PS4_Moderate PP1_Moderate
Not Met criteria codes 2
BA1 BS1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of histidine with tyrosine at codon 4822 of the RYR1 protein, p.(His4833Tyr). This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in two unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, both of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Moderate (PMID: 18212565). This variant segregates with MHS in five individuals, PP1_Moderate (PMID: 18212565). A functional study in HEK293 cells shows an increased sensitivity to RYR1 agonists, PS3_Moderate (PMID: 20461000). This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Sup (PMID: 21118704). A REVEL score >0.85 (0.975) supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as Likely Pathogenic. Criteria implemented: PS3_Moderate, PS4_Moderate, PM1_Supporting, PP1_Moderate, PP3_Moderate.
Met criteria codes
PS3_Moderate
A functional study in HEK293 cells shows an increased sensitivity to RYR1 agonists, PS3_Moderate (PMID: 20461000).
PP3_Moderate
REVEL score >0.85 (0.975) supports a pathogenic status for this variant, PP3_Moderate.
PM1_Supporting
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Sup (PMID: 21118704).
PS4_Moderate
This variant has been reported in two unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, both of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Moderate (PMID: 18212565).
PP1_Moderate
This variant segregates with MHS in five individuals, PP1_Moderate (PMID: 18212565).
Not Met criteria codes
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Curation History
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