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  • See Evidence submitted by expert panel for details.

Variant: NM_000540.2(RYR1):c.1597C>T (p.Arg533Cys)

CA024293

133102 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 5ac26bd0-a5a1-4e1c-99c8-8fd8264d8656

HGVS expressions

NM_000540.2:c.1597C>T
NM_000540.2(RYR1):c.1597C>T (p.Arg533Cys)
NC_000019.10:g.38455471C>T
CM000681.2:g.38455471C>T
NC_000019.9:g.38946111C>T
CM000681.1:g.38946111C>T
NC_000019.8:g.43637951C>T
NG_008866.1:g.26772C>T
ENST00000355481.8:c.1597C>T
ENST00000359596.7:n.1597C>T
ENST00000360985.7:c.1597C>T
NM_001042723.1:c.1597C>T
NM_000540.3:c.1597C>T
NM_001042723.2:c.1597C>T

Pathogenic

Met criteria codes 5
PP3_Moderate PS3_Moderate PP1_Strong PS4_Supporting PM1
Not Met criteria codes 1
BP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of Arginine with Cysteine at codon 533 of the RYR1 protein, p.(Arg533Cys). This variant is not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in an individual with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Supporting (PMID:12709367). Functional studies in HEK293 cells show an increased sensitivity to RYR1 agonists, PS3_Moderate (PMID:23459219). This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704). This variant segregates with MHS in 8 individuals PP1_Strong (PMID:12709367). A REVEL score >0.85 supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as Pathogenic. Criteria implemented: PS4_Supporting, PS3_Moderate, PM1, PP1_Strong, PP3_Moderate.
Met criteria codes
PP3_Moderate
>0.85 REVEL
PS3_Moderate
Reduced EC50 in HEK293 assay for 4-CmC
PP1_Strong
Eight IVCT positive mutation positive relatives.
PS4_Supporting
MH event during surgery, positive IVCT
PM1
Located in RYR1 N-terminal hotspot.
Not Met criteria codes
BP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Approved on: 2021-03-17
Published on: 2021-03-31
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