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Variant: NM_000540.2(RYR1):c.526G>A (p.Glu176Lys)

CA024501

198090 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia of anesthesia
Inheritance Mode: Autosomal dominant inheritance
UUID: 814dc1b7-2fc3-4a67-b990-7294a3a48d50
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_000540.2:c.526G>A
NM_000540.2(RYR1):c.526G>A (p.Glu176Lys)
NC_000019.10:g.38444250G>A
CM000681.2:g.38444250G>A
NC_000019.9:g.38934890G>A
CM000681.1:g.38934890G>A
NC_000019.8:g.43626730G>A
NG_008866.1:g.15551G>A
ENST00000599547.6:n.526G>A
ENST00000359596.8:c.526G>A
ENST00000355481.8:c.526G>A
ENST00000359596.7:n.526G>A
ENST00000360985.7:c.526G>A
NM_001042723.1:c.526G>A
NM_000540.3:c.526G>A
NM_001042723.2:c.526G>A
NM_000540.3(RYR1):c.526G>A (p.Glu176Lys)

Uncertain Significance

Met criteria codes 2
PS4_Moderate PM1
Not Met criteria codes 2
BP4 PP3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of glutamic acid with lysine at codon 176 of the RYR1 protein, p.(Glu176Lys). The maximum allele frequency for this variant among the six major gnomAD populations is SAS: 0.0000649, a frequency consistent with pathogenicity for MHS. This variant has been reported in three individuals with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Moderate (PMID:30236257, MH Investigation Unit (MHIU), UHN, Toronto). No functional studies were identified for this variant. This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704). A REVEL score of 0.803 supports neither a pathogenic nor a benign status for this variant. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PS4_Moderate, PM1.
Met criteria codes
PS4_Moderate
This variant has been reported in three individuals with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Moderate (PMID:30236257, MH Investigation Unit (MHIU), UHN, Toronto).
PM1
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704).
Not Met criteria codes
BP4
A REVEL score of 0.803 supports neither a pathogenic nor a benign status for this variant.
PP3
A REVEL score of 0.803 supports neither a pathogenic nor a benign status for this variant.
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