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Variant: NM_000540.3(RYR1):c.6502G>A (p.Val2168Met)

CA024603

12976 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: ba9df0d1-d974-42fd-9d62-e1fe3355bb7c
Approved on: 2022-03-29
Published on: 2022-03-29

HGVS expressions

NM_000540.3:c.6502G>A
NM_000540.3(RYR1):c.6502G>A (p.Val2168Met)
NC_000019.10:g.38494579G>A
CM000681.2:g.38494579G>A
NC_000019.9:g.38985219G>A
CM000681.1:g.38985219G>A
NC_000019.8:g.43677059G>A
NG_008866.1:g.65880G>A
ENST00000359596.8:c.6502G>A
ENST00000355481.8:c.6502G>A
ENST00000359596.7:n.6502G>A
ENST00000360985.7:c.6499G>A
NM_000540.2:c.6502G>A
NM_001042723.1:c.6502G>A
NM_001042723.2:c.6502G>A
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Pathogenic

Met criteria codes 5
PP3_Moderate PS3_Moderate PP1_Strong PS4 PM1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of Valine with Methionine at codon 2168 of the RYR1 protein, p.(Val2168Met). This variant is not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in over 25 unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, over 25 of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4 (PMID:11668625; PMID:30236257; PMID:20681998 and others). Functional studies in human myotubes from nine individuals (5 families) showed an increased sensitivity to RYR1 agonists, PS3_Moderate (PMID:15299003). This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704). This variant segregates with MHS eight individuals PP1_Strong (PMID:12434264, PMID:11575529). A REVEL score >0.85 (0.896)supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as Pathogenic. Criteria implemented: PS3_Moderate, PS4, PM1, PP1_Strong, PP3_Moderate.
Met criteria codes
PP3_Moderate
A REVEL score >0.85 (0.896)supports a pathogenic status for this variant, PP3_Moderate.
PS3_Moderate
Functional studies in human myotubes from nine individuals (5 families) showed an increased sensitivity to RYR1 agonists, PS3_Moderate (PMID:15299003).
PP1_Strong
This variant segregates with MHS eight individuals PP1_Strong (PMID:12434264, PMID:11575529).
PS4
This variant is not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in over 25 unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, over 25 of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4 (PMID:11668625; PMID:30236257; PMID:20681998 and others).
PM1
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704).
Curation History
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