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Variant: NM_000540.2(RYR1):c.7317G>C (p.Glu2439Asp)

CA024758

133198 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 808babe0-b9f8-49b8-b4d4-9b197e688c3a

HGVS expressions

NM_000540.2:c.7317G>C
NM_000540.2(RYR1):c.7317G>C (p.Glu2439Asp)
NC_000019.10:g.38500010G>C
CM000681.2:g.38500010G>C
NC_000019.9:g.38990650G>C
CM000681.1:g.38990650G>C
NC_000019.8:g.43682490G>C
NG_008866.1:g.71311G>C
ENST00000599547.6:n.7317G>C
ENST00000359596.8:c.7317G>C
ENST00000355481.8:c.7317G>C
ENST00000359596.7:n.7317G>C
ENST00000360985.7:c.7314G>C
ENST00000594335.5:n.769G>C
NM_001042723.1:c.7317G>C
NM_000540.3:c.7317G>C
NM_001042723.2:c.7317G>C
NM_000540.3(RYR1):c.7317G>C (p.Glu2439Asp)

Uncertain Significance

Met criteria codes 1
PM1
Not Met criteria codes 5
PS4 PP3 BA1 BS1 BP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of glutamic acid with aspartic acid at codon 2439 of the RYR1 protein, p.(Glu2439Asp). This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. To our knowledge, this variant has not been reported in any individuals with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result, PS4 not applied (PMID:16835904, unclear MH history). No functional studies were identified for this variant. This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704). A REVEL score of 0.734 supports neither a pathogenic nor a benign status for this variant. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PM1.
Met criteria codes
PM1
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1 (PMID: 21118704).
Not Met criteria codes
PS4
To our knowledge, this variant has not been reported in any individuals with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result, PS4 not applied (PMID:16835904, unclear MH history).
PP3
A REVEL score of 0.734 supports neither a pathogenic nor a benign status for this variant.
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP4
A REVEL score of 0.734 supports neither a pathogenic nor a benign status for this variant.
Approved on: 2023-04-06
Published on: 2023-04-06
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