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Variant: NM_000540.2(RYR1):c.742G>C (p.Gly248Arg)

CA024799

133203 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 401b6e54-e8fe-4a87-99c9-105d6bf96366

HGVS expressions

NM_000540.2:c.742G>C
NM_000540.2(RYR1):c.742G>C (p.Gly248Arg)
NC_000019.10:g.38446710G>C
CM000681.2:g.38446710G>C
NC_000019.9:g.38937350G>C
CM000681.1:g.38937350G>C
NC_000019.8:g.43629190G>C
NG_008866.1:g.18011G>C
ENST00000599547.6:n.742G>C
ENST00000359596.8:c.742G>C
ENST00000355481.8:c.742G>C
ENST00000359596.7:n.742G>C
ENST00000360985.7:c.742G>C
NM_001042723.1:c.742G>C
NM_000540.3:c.742G>C
NM_001042723.2:c.742G>C
NM_000540.3(RYR1):c.742G>C (p.Gly248Arg)

Pathogenic

Met criteria codes 6
PP1_Moderate PS1 PS3_Moderate PP3_Moderate PM1_Supporting PS4_Moderate
Not Met criteria codes 3
BS3 BS1 BA1

Evidence Links 2

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of glycine with arginine at codon 248 of the RYR1 protein c.742G>C; p.(Gly248Arg). The maximum allele frequency for this variant among the six major gnomAD populations is EAS: 0.00005), a frequency consistent with pathogenicity for MHS. This variant has been reported in four unrelated individuals who have a personal or family history of a malignant hyperthermia reaction and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (when the proband was unavailable for testing a positive diagnostic test result in a mutation positive relative was counted), PS4_Moderate (PMID:30236257, PMID:19346234). This variant segregates with MHS in five individuals/families, PP1_Moderate (PMID:30236257, PMID:19346234, PMID:18564801). Functional studies in HEK293 cells show an increased sensitivity to RYR1 agonists, PS3_Moderate (PMID:26115329, PMID:27857962). Another variant assessed as pathogenic occurs at this codon, c.742G>A; p.(Gly248Arg), PS1. This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, use PM1_Supporting to avoid overweighting with PS1 (PMID: 21118704).A REVEL score > 0.85 supports pathogenicity, PP3_Moderate. This variant has been classified as Pathogenic. Criteria implemented: PS4_Moderate, PS3_Moderate, PM1_Supporting, PS1, PP1_Moderate, PP3_Moderate.
Met criteria codes
PP1_Moderate
This variant segregates with MHS in five individuals/families, PP1_Moderate (PMID:30236257, PMID:19346234, PMID:18564801).
PS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PS3_Moderate
HEK 293 assays show increased sensitivity

PP3_Moderate
REVEL > 0.85
PM1_Supporting
N-terminal hotspot region. PS1 also implemented so use PM1 at supporting.
PS4_Moderate
Four unrelated individuals with MH reaction and positive diagnostic test, IVCT/CHCT
Not Met criteria codes
BS3
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Approved on: 2022-09-08
Published on: 2022-09-08
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