The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No CSPEC related information was provided by the message!

  • See Evidence submitted by expert panel for details.

Variant: NM_000540.2(RYR1):c.982C>T (p.Arg328Trp)

CA025007

133245 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: 23bb36f5-3d3b-492e-b82b-c744bf7b73be
Approved on: 2023-04-07
Published on: 2023-04-07

HGVS expressions

NM_000540.2:c.982C>T
NM_000540.2(RYR1):c.982C>T (p.Arg328Trp)
NC_000019.10:g.38448673C>T
CM000681.2:g.38448673C>T
NC_000019.9:g.38939313C>T
CM000681.1:g.38939313C>T
NC_000019.8:g.43631153C>T
NG_008866.1:g.19974C>T
ENST00000599547.6:n.982C>T
ENST00000359596.8:c.982C>T
ENST00000355481.8:c.982C>T
ENST00000359596.7:n.982C>T
ENST00000360985.7:c.982C>T
NM_001042723.1:c.982C>T
NM_000540.3:c.982C>T
NM_001042723.2:c.982C>T
NM_000540.3(RYR1):c.982C>T (p.Arg328Trp)
More

Likely Pathogenic

The Expert Panel has overridden the computationally generated classification - "Uncertain Significance - Insufficient Evidence"
Met criteria codes 4
PS4_Supporting PS3_Moderate PP1 PM1
Not Met criteria codes 5
PP3 BA1 BS3 BS1 BP4

Evidence Links 1

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of arginine with tryptophan at codon 328 of the RYR1 protein p.(Arg328Trp). The maximum allele frequency for this variant among the six major gnomAD populations is SAS: 0.00006 maf, a frequency consistent with pathogenicity for MHS. This variant has been reported in one proband with a personal or family history of a malignant hyperthermia reaction and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (when the proband was unavailable for testing a positive diagnostic test result in a mutation positive relative was counted), PS4_Supporting (PMID:12883402). Functional studies in HEK293 cells show an increased sensitivity to RYR1 agonists, PS3_Moderate (PMID:12883402). This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, ( PM1, PM1_Sup) (PMID: 21118704). This variant segregates with MHS in four individuals, PP1 (PMID:12883402). For these reasons, this variant has been classified as Likely Pathogenic. Criteria implemented: PS4_Supporting, PS3_Moderate, PM1, PP1.
Met criteria codes
PS4_Supporting
One proband reported, MH crisis, IVCT+ relatives
PS3_Moderate
HEK293 assay

PP1
Four relatives IVCT+/mutation +
PM1
N-terminal hotspot region.
Not Met criteria codes
PP3
REVEL < 0.85
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS3
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Curation History
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.