The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No ClinVar Id was directly found from the curated document
  • ClinVar Id was derived from the Allele Registry.


Variant: NM_000261.2:c.1187_1188insCCCAGA

CA1139654950

1342966 (ClinVar)

Gene: MYOC
Condition: juvenile open angle glaucoma
Inheritance Mode: Autosomal dominant inheritance
UUID: 0915a378-fcdd-444a-be59-bf651850cb53

HGVS expressions

NM_000261.2:c.1187_1188insCCCAGA
NC_000001.11:g.171636254_171636255insTGGGTC
CM000663.2:g.171636254_171636255insTGGGTC
NC_000001.10:g.171605394_171605395insTGGGTC
CM000663.1:g.171605394_171605395insTGGGTC
NC_000001.9:g.169872017_169872018insTGGGTC
NG_008859.1:g.21381_21382insCCCAGA
ENST00000037502.11:c.1187_1188insCCCAGA
ENST00000637303.1:c.235-2376_235-2375insTGGGTC
ENST00000638471.1:c.*525_*526insCCCAGA
ENST00000037502.10:c.1187_1188insCCCAGA
ENST00000614688.1:c.*151_*152insCCCAGA
NM_000261.1:c.1187_1188insCCCAGA
NM_000261.2(MYOC):c.1187_1188insCCCAGA (p.Asp395_Glu396insAspPro)

Uncertain Significance

Met criteria codes 4
PP1 PS3_Moderate PM4_Supporting PM2_Supporting
Not Met criteria codes 11
PS2 PS1 PS4 BP4 BP7 BA1 PP3 PM5 PM6 BS3 BS1

Evidence Links 1

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Glaucoma Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines Version 1.1

PDF
Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Glaucoma VCEP
The c.1187_1188insCCCAGA variant in MYOC is predicted to cause a change in the length of the protein due to an in-frame insertion of 2 amino acids (p.Asp395_Glu396insAspPro). This variant is predicted to involve < 10% of the protein within the conserved olfactomedin domain, meeting PM4_Supporting. This variant was not found in any population of gnomAD (v2.1.1), meeting the ≤ 0.0001 threshold set for PM2_Supporting in a population of at least 10,000 alleles. There was no computational evidence predicting a damaging or benign impact of this variant on MYOC function. A previous study (PMID: 35196929) demonstrated that the Asp395_Glu396insAspPro protein had increased insolubility and reduced secretion levels compared to wild type myocilin protein and met the OddsPath threshold for PS3_Moderate (> 4.3), indicating that this variant did impact protein function. 3 segregations in 1 family, with juvenile open angle glaucoma (JOAG), have been reported (PMID: 23566828), which fulfilled PP1 (3-4 meioses). Only 1 proband with JOAG had been reported (PMID: 23566828), not meeting the ≥ 2 probands threshold required to meet PS4_Supporting. In summary, this variant met the criteria to receive a score of 5 and to be classified as a variant of uncertain significance (uncertain significance classification range -1 to 5) for juvenile open angle glaucoma based on the ACMG/AMP criteria met, as specified by the ClinGen Glaucoma VCEP (v1, 12 Oct 2021): PS3_Moderate, PP1, PM2_Supporting, PM4_Supporting.
Met criteria codes
PP1
3 segregations in 1 family, with JOAG, have been reported (PMID: 23566828), which fulfilled PP1 (3-4 meioses).
PS3_Moderate
A previous study (PMID: 35196929) demonstrated that the Asp395_Glu396insAspPro protein had increased insolubility and reduced secretion levels compared to wild type myocilin protein and met the OddsPath threshold for PS3_Moderate (> 4.3), indicating that this variant did impact protein function.

PM4_Supporting
This in-frame insertion variant is predicted to involve ≤ 10% of the protein and is within the conserved olfactomedin domain.
PM2_Supporting
This variant was not found in any population of gnomAD (v2.1.1), meeting the ≤ 0.0001 threshold set for PM2_Supporting in a population of at least 10,000 alleles.
Not Met criteria codes
PS2
This variant has not been identified de novo.
PS1
This variant does not involve an amino acid change.
PS4
Only 1 proband with JOAG had been reported (PMID: 23566828), not meeting the ≥ 2 probands threshold required to meet PS4_Supporting.
BP4
This is not a missense, synonymous or non-coding variant.
BP7
This is not a synonymous or non-coding variant.
BA1
This criterion was not met as PM2_Supporting has been met.
PP3
This is not a missense variant.
PM5
This is not a missense variant.
PM6
This variant has not been identified de novo.
BS3
This criterion was not met as PS3_Moderate has been met.
BS1
This criterion was not met as PM2_Supporting has been met.
Approved on: 2022-03-07
Published on: 2022-07-11
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