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Variant: NM_000018.4(ACADVL):c.1269+1del

CA1139665149

971356 (ClinVar)

Gene: ACADVL
Condition: very long chain acyl-CoA dehydrogenase deficiency
Inheritance Mode: Autosomal recessive inheritance
UUID: 4aa7c3e5-711d-407b-a86b-4524114c23b2

HGVS expressions

NM_000018.4:c.1269+1del
NM_000018.4(ACADVL):c.1269+1del
NC_000017.11:g.7223731del
CM000679.2:g.7223731del
NC_000017.10:g.7127050del
CM000679.1:g.7127050del
NC_000017.9:g.7067774del
NG_007975.1:g.8898del
NG_008391.2:g.1321del
NG_033038.1:g.15815del
ENST00000356839.10:c.1269+1del
ENST00000322910.9:c.*1224+1del
ENST00000350303.9:c.1203+1del
ENST00000356839.9:c.1269+1del
ENST00000542255.6:n.127+1del
ENST00000543245.6:c.1338+1del
ENST00000578579.2:n.440+1del
ENST00000578711.1:n.227del
ENST00000578824.5:n.685+1del
ENST00000579425.5:n.293+1del
ENST00000579546.1:n.106+1del
ENST00000583850.5:n.44+1del
ENST00000583858.5:n.298+1del
ENST00000585203.6:n.477+1del
NM_000018.3:c.1269+1del
NM_001033859.2:c.1203+1del
NM_001270447.1:c.1338+1del
NM_001270448.1:c.1041+1del
NM_001033859.3:c.1203+1del
NM_001270447.2:c.1338+1del
NM_001270448.2:c.1041+1del

Uncertain Significance

Met criteria codes 2
PVS1_Moderate PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
ACADVL VCEP
The c.1269+1del variant in ACADVL occurs within the canonical splice donor/acceptor site (+/- 1,2) of intron 12. It is predicted to cause skipping of biologically-relevant-exon 12/20, resulting in an in-frame deletion (removes amino acids 395-423) that is predicted to escape nonsense mediated decay and remove <10% of the protein (PVS1_Moderate). To our knowledge, this variant has not been reported in an individual affected with very long chain acyl CoA dehydrogenase (VLCAD) deficiency. To our knowledge, no functional studies have been performed on this variant. This variant is absent from gnomAD v2.1.1 (PM2_Supporting). In summary, this variant meets the criteria to be classified as a variant of uncertain significance for autosomal recessive VLCAD deficiency based on the ACMG/AMP criteria applied, as specified by the ClinGen ACADVL Variant Curation Expert Panel: PVS1_Moderate, PM2_Supporting (VCEP specifications version1; approved November 8, 2021)
Met criteria codes
PVS1_Moderate
The c.1269+1del variant in ACADVL occurs within the canonical splice donor/acceptor site (+/- 1,2) of intron 12. It is predicted to cause skipping of biologically-relevant-exon 12/20, resulting in an in-frame deletion (removes amino acids 395-423) that is predicted to escape nonsense mediated decay and remove <10% of the protein (PVS1_Moderate).
PM2_Supporting
This variant is absent from gnomAD v2.1.1 (PM2_Supporting).
Approved on: 2022-12-14
Published on: 2022-12-14
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