The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_001005361.3(DNM2):c.1106G>A (p.Arg369Gln)

CA118655

7279 (ClinVar)

Gene: DNM2
Condition: centronuclear myopathy
Inheritance Mode: Autosomal dominant inheritance
UUID: d7675724-a74a-4e3b-b05f-1cce015d7a95
Approved on: 2024-08-07
Published on: 2024-10-01

HGVS expressions

NM_001005361.3:c.1106G>A
NM_001005361.3(DNM2):c.1106G>A (p.Arg369Gln)
NC_000019.10:g.10793833G>A
CM000681.2:g.10793833G>A
NC_000019.9:g.10904509G>A
CM000681.1:g.10904509G>A
NC_000019.8:g.10765509G>A
NG_008792.1:g.80755G>A
ENST00000682285.1:n.1294G>A
ENST00000682524.1:n.1294G>A
ENST00000683738.1:n.1294G>A
ENST00000355667.11:c.1106G>A
ENST00000389253.9:c.1106G>A
ENST00000355667.10:c.1106G>A
ENST00000359692.10:c.1106G>A
ENST00000389253.8:c.1106G>A
ENST00000408974.8:c.1106G>A
ENST00000585892.5:c.1106G>A
ENST00000587830.2:c.362G>A
ENST00000591701.5:n.466G>A
NM_001005360.2:c.1106G>A
NM_001005361.2:c.1106G>A
NM_001005362.2:c.1106G>A
NM_001190716.1:c.1106G>A
NM_004945.3:c.1106G>A
NM_001190716.2:c.1106G>A
NM_001005360.3:c.1106G>A
NM_001005362.3:c.1106G>A
NM_004945.4:c.1106G>A
More

Pathogenic

Met criteria codes 6
PM2_Supporting PP1_Strong PS4 PP3 PP2 PM6

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Congenital Myopathies Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for DNM2 Version 1.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Congenital Myopathies VCEP
The c.1106 G>A (NM_001005361.3(DNM2):c.1106G>A (p.Arg369Gln)) variant in DNM2 is a missense variant predicted to cause substitution of Arg by Gln at amino acid 369. The variant was found in at least 16 individuals from 2 families, all with centronuclear myopathy (PS4; PMIDs: 16227997, 26908122). The mutation segregated in 14 affected family members from 2 families (PP1_strong; PMIDs: 16227997, 26908122). This variant has been identified as a de novo occurrence with an unconfirmed parental relationship in 1 individual with centronuclear myopathy (PM6; PMID: 16227997). This variant is absent from gnomAD v4.1.0 (PM2_Supporting). The computational predictor REVEL gives a score of 0.7, (rounded from 0.698), which meets the threshold of 0.7, evidence that correlates with impact to DNM2 function (PP3). DNM2, in which the variant was identified, is defined by the ClinGen Congenital Myopathies VCEP as a gene that has a low rate of benign missense variation and where pathogenic missense variants are a common mechanism of disease (PP2). In summary, this variant meets the criteria to be classified as likely pathogenic for autosomal dominant centronuclear myopathy based on the ACMG/AMP criteria applied, as specified by the ClinGen Congenital Myopathies VCEP: (PS4, PP1_strong, PM6, PM2_supporting, PP3, PP2; Version 1, 8/7/2024).
Met criteria codes
PM2_Supporting
This variant is absent from gnomAD v4.1.0 (PM2_Supporting). Coverage of the region of the gene in which the variant is found is adequate.
PP1_Strong
The mutation segregated in 14 affected family members from 2 families (PP1_strong; PMIDs: 16227997, 26908122).
PS4
The variant was found in 16 individuals from the 2 families, all with centro-nuclear myopathy.
PP3
The computational predictor REVEL gives a score of 0.7, (rounded from 0.698 with VCEP approval), which meets the threshold of 0.7, evidence that correlates with impact to DNM2 function.
PP2
DNM2, in which the variant was identified, is defined by the ClinGen Congenital Myopathies VCEP as a gene that has a low rate of benign missense variation and where pathogenic missense variants are a common mechanism of disease (PP2). The Z-score is 3.48.
PM6
This variant has been identified as a de novo occurrence with unconfirmed parental relationships in 1 individual with autosomal dominant centronuclear myopathy PM6; PMIDs 16227997).
Curation History
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.