The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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  • See Evidence submitted by expert panel for details.

CA1244333

Gene: MYOC
Condition: primary open angle glaucoma
Inheritance Mode: Autosomal dominant inheritance
UUID: de85baff-24da-4c94-996f-facafe915572

HGVS expressions

NM_000261.2:c.56_72dup
NC_000001.11:g.171652542_171652558dup
CM000663.2:g.171652542_171652558dup
NC_000001.10:g.171621682_171621698dup
CM000663.1:g.171621682_171621698dup
NC_000001.9:g.169888305_169888321dup
NG_008859.1:g.5078_5094dup
ENST00000037502.11:c.56_72dup
ENST00000638471.1:c.56_72dup
ENST00000037502.10:c.56_72dup
ENST00000614688.1:c.56_72dup
NM_000261.1:c.56_72dup

Uncertain Significance

The Expert Panel has overridden the computationally generated classification - "[unknown]"
Not Met criteria codes 15
PS2 PS1 PS3 PS4 BA1 PP1 PP3 PM6 PM2 PM5 PM4 BS3 BS1 BP4 BP7

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Glaucoma VCEP
The c.56_72dup variant in MYOC is predicted to cause a change in the length of the protein due to a duplication of 17 nucleotides which leads to a frameshift and termination of the protein at amino acid 89 (p.Cys25SerfsTer65). Truncation of this protein occurs outside of the conserved olfactomedin domain, which did not meet PM4. The highest minor allele frequency of this variant was in the African/African-American population of gnomAD (v2.1.1) = 0.0001231 (2 alleles out of 16,244), which did not meet the PM2_Supporting allele frequency threshold (≤ 0.0001) or the BS1 allele frequency threshold (≥ 0.001). There was no computational or functional evidence predicting a damaging or benign impact of this variant on MYOC function. Although a proband with primary open angle glaucoma had been reported carrying this variant, PM2_Supporting was not met, therefore PS4 did not apply. In summary, this variant did not meet any criteria, receiving a score of 0 and a classification as a variant of uncertain significance (uncertain significance classification range -1 to 5) for primary open angle glaucoma based on the ACMG/AMP criteria met, as specified by the ClinGen Glaucoma VCEP (v1, 12 Oct 2021): none.
Not Met criteria codes
PS2
This variant has not been identified de novo.
PS1
This variant does not involve an amino acid change.
PS3
No functional evidence has been found for this variant.
PS4
Although a proband with POAG had been reported carrying this variant, PM2_Supporting was not met, therefore PS4 did not apply.
BA1
This variant did not meet the ≥ 0.01 minor allele frequency threshold in gnomAD (v2.1.1).
PP1
No segregations have been reported for this variant.
PP3
This is not a missense variant.
PM6
This variant has not been identified de novo.
PM2
The highest minor allele frequency of this variant was in the African/African-American population of gnomAD (v2.1.1) = 0.0001231 (2 alleles out of 16,244), which did not meet the ≤ 0.0001 threshold set for PM2_Supporting.
PM5
This is not a missense variant.
PM4
Truncation of this protein occurs outside of the conserved olfactomedin domain, which did not meet PM4.
BS3
No functional evidence has been found for this variant.
BS1
The highest minor allele frequency of this variant was in the African/African-American population of gnomAD (v2.1.1) = 0.0001231 (2 alleles out of 16,244), which did not meet the ≥ 0.001 threshold nor the ≥ 5 alleles necessary to meet BS1.
BP4
This is not a missense, synonymous or non-coding variant.
BP7
This is not a synonymous or non-coding variant.
Approved on: 2022-11-10
Published on: 2022-11-10
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