The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_000138.5(FBN1):c.8002G>T (p.Gly2668Cys)

CA16606683

381609 (ClinVar)

Gene: FBN1
Condition: Marfan syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: 8b15930c-0ef1-4857-bbe2-7c68730b5c9f
Approved on: 2024-08-22
Published on: 2024-08-22

HGVS expressions

NM_000138.5:c.8002G>T
NM_000138.5(FBN1):c.8002G>T (p.Gly2668Cys)
NC_000015.10:g.48415585C>A
CM000677.2:g.48415585C>A
NC_000015.9:g.48707782C>A
CM000677.1:g.48707782C>A
NC_000015.8:g.46495074C>A
NG_008805.2:g.235204G>T
ENST00000559133.6:c.*810G>T
ENST00000674301.2:c.*1515G>T
ENST00000682158.1:n.1383G>T
ENST00000682170.1:n.2183G>T
ENST00000682767.1:n.1299G>T
ENST00000316623.10:c.8002G>T
ENST00000674301.1:c.3168G>T
ENST00000316623.9:c.8002G>T
ENST00000559133.5:c.3371G>T
ENST00000561429.1:n.257G>T
NM_000138.4:c.8002G>T

Likely Pathogenic

Met criteria codes 5
PP3 PP2 PP4 PM2_Supporting PM1
Not Met criteria codes 1
PM5

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
The NM_00138 c.8002G>T is a missense variant in FBN1 predicted to cause a substitution of a glycine by cysteine at amino acid 2668 (p.Gly2668Cys). This cysteine-creating variant impacts a critical glycine between Cys3 and Cys4 within a calcium binding EGF-like domain, important for interdomain packaging (PM1, PMID 31227806). This variant has been reported twice in ClinVar: once as likely pathogenic, and once as uncertain significance (Variation ID: 381609). This variant has been reported in three individuals from the same study who met revised Ghent criteria; however, the relatedness of these individuals was not provided (PMID 26787436, PP4). This variant was also found in an individual with thoracic aortic dissection and striae (Internal lab data, PMID 11700157). This variant is not present in gnomAD (PM2_sup; https://gnomad.broadinstitute.org/ v2.1.1). A different missense variant at this position, c.8003G>A p.Gly2668Asp, has previously been reported in individuals with a clinical diagnosis of Marfan syndrome (MFS) or MFS-related features (PMID 26787436, internal lab data), however the p.Gly2668Asp variant has not yet been reviewed the FBN1 Variant Curation Expert Panel. Computational prediction tools and conservation analysis suggest that this variant may impact the protein (REVEL: 0.987, PP3). The constraint z-score for missense variants affecting FBN1 is 8.18 (PP2; https://gnomad.broadinstitute.org/ v4.0.0). In summary, this variant meets criteria to be classified as likely pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PM1, PM2_Sup, PP2, PP3, PP4.
Met criteria codes
PP3
REVEL score: 0.987
PP2
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM2_Supporting
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM1
Cys-creating variant in cbEGF-like domain; Also impacting a critical Gly between Cys3 and Cys4
Not Met criteria codes
PM5
c.80003G>A p.Gly2668Asp – Not yet interpreted by ClinGen VCEP Bichat: found in one proband with aortic dissection+SK (+0.5) PMID 26787436- Netherlands- 1 proband met revised Ghent criteria (PP4) PMID 19293843- likely overlap with internal Bichat case REVEL: 0.939, Absent in gnomAD (PM1, PM5, PM2_Sup, PP2, PP3, PP4)- Meets Likely Path
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