The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No ClinVar Id was directly found from the curated document


Variant: NM_001354803.2:c.377del

CA2017997775

Gene: GCK
Condition: monogenic diabetes
Inheritance Mode: Semidominant inheritance
UUID: a07096cb-60d5-417e-b03b-154599a64bf5

HGVS expressions

NM_001354803.2:c.377del
NC_000007.14:g.44145194del
CM000669.2:g.44145194del
NC_000007.13:g.44184793del
CM000669.1:g.44184793del
NC_000007.12:g.44151318del
NG_008847.1:g.49233del
NG_008847.2:g.57980del
ENST00000395796.8:c.*1341del
ENST00000616242.5:c.*463del
ENST00000683378.1:n.569del
ENST00000336642.9:c.377del
ENST00000345378.7:c.1346del
ENST00000403799.8:c.1343del
ENST00000671824.1:c.1406del
ENST00000672743.1:n.355del
ENST00000673284.1:c.1343del
ENST00000336642.8:n.395del
ENST00000345378.6:c.1346del
ENST00000395796.7:c.1340del
ENST00000403799.7:c.1343del
ENST00000437084.1:c.1292del
ENST00000459642.1:n.723del
ENST00000616242.4:n.1340del
NM_000162.3:c.1343del
NM_033507.1:c.1346del
NM_033508.1:c.1340del
NM_000162.4:c.1343del
NM_001354800.1:c.1343del
NM_001354801.1:c.332del
NM_001354802.1:c.203del
NM_001354803.1:c.377del
NM_033507.2:c.1346del
NM_033508.2:c.1340del
NM_000162.5:c.1343del
NM_033507.3:c.1346del
NM_033508.3:c.1340del

Pathogenic

Met criteria codes 3
PVS1 PM2_Supporting PP4_Moderate
Not Met criteria codes 1
PS4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Monogenic Diabetes Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GCK Version 1.2.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Monogenic Diabetes VCEP
The c.1343del variant in the glucokinase gene, GCK, causes a frameshift in the protein at codon 448 (NM_000162.5), adding 166 novel amino acids before encountering a stop codon (p.(Gly448AlafsTer166)). This variant, located in exon 10 of 10, is predicted to cause loss of a stop codon and result in an elongated protein. The additional residues are expected to cause improper folding, resulting in loss of function in a gene in which loss-of-function is an established disease mechanism (PVS1; PMID 19790256). Additionally, this variant is absent from gnomAD v2.1.1 (PM2_Supporting). This variant was identified in an individual with a clinical history highly specific for GCK-MODY (FBG 5.5-8 mmol/L and HbA1c 5.6 - 7.6%, negative antibodies, and a three generation family history of diabetes) (PP4_Moderate; internal lab contributor). In summary, the c.1343del variant meets the criteria to be classified as pathogenic for monogenic diabetes. ACMG/AMP criteria applied, as specified by the ClinGen MDEP (specification version 1.2.0, approved 6/7/2023): PVS1, PP4_Moderate, PM2_Supporting).
Met criteria codes
PVS1
This variant, located in exon 10 of 10, is predicted to cause loss of a stop codon and result in an elongated protein. The additional residues are expected to cause improper folding, resulting in loss of function in a gene in which loss-of-function is an established disease mechanism (PVS1; PMID 19790256).
PM2_Supporting
Absent in gnomAD v2.1.1 (PM2_Supporting).
PP4_Moderate
This variant was identified in an individual with a clinical history highly specific for GCK-MODY (FBG 5.5-8 mmol/L and HbA1c 5.6 - 7.6%, negative antibodies, and a three generation family history of diabetes) (PP4_Moderate; internal lab contributors).
Not Met criteria codes
PS4
Identified in one individual from internal contributor
Approved on: 2023-06-24
Published on: 2023-06-24
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.