The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No ClinVar Id was directly found from the curated document


Variant: NM_033508.3:c.624_625delinsAG

CA2018007653

Gene: GCK
Condition: monogenic diabetes
Inheritance Mode: Semidominant inheritance
UUID: 70833f64-6a73-49d4-bcb8-a210b8e59af3

HGVS expressions

NM_033508.3:c.624_625delinsAG
NC_000007.14:g.44149811_44149812delinsCT
CM000669.2:g.44149811_44149812delinsCT
NC_000007.13:g.44189410_44189411delinsCT
CM000669.1:g.44189410_44189411delinsCT
NC_000007.12:g.44155935_44155936delinsCT
NG_008847.1:g.44612_44613delinsAG
NG_008847.2:g.53359_53360delinsAG
ENST00000395796.8:c.*625_*626delinsAG
ENST00000616242.5:c.627_628delinsAG
ENST00000682635.1:n.1113_1114delinsAG
ENST00000345378.7:c.630_631delinsAG
ENST00000403799.8:c.627_628delinsAG
ENST00000671824.1:c.627_628delinsAG
ENST00000673284.1:c.627_628delinsAG
ENST00000345378.6:c.630_631delinsAG
ENST00000395796.7:c.624_625delinsAG
ENST00000403799.7:c.627_628delinsAG
ENST00000437084.1:c.576_577delinsAG
ENST00000616242.4:n.624_625delinsAG
NM_000162.3:c.627_628delinsAG
NM_033507.1:c.630_631delinsAG
NM_033508.1:c.624_625delinsAG
NM_000162.4:c.627_628delinsAG
NM_001354800.1:c.627_628delinsAG
NM_033507.2:c.630_631delinsAG
NM_033508.2:c.624_625delinsAG
NM_000162.5:c.627_628delinsAG
NM_033507.3:c.630_631delinsAG

Likely Pathogenic

Met criteria codes 4
PM2_Supporting PP2 PP4 PM5_Strong

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Monogenic Diabetes Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GCK Version 1.1.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Monogenic Diabetes VCEP
The c.627_628delinsAG variant in the glucokinase gene, GCK, is a deletion of GA followed by an insertion of AG, resulting in an amino acid change of methionine to valine at codon 210 (p.(Met210Val)) of NM_000162.5. GCK is defined by the ClinGen MDEP as a gene that has a low rate of benign missense variation and has pathogenic missense variants as a common mechanism of disease (PP2). This variant is absent in gnomAD v2.1.1 (PM2_Supporting), and was identified in an individual with a clinical history highly specific for GCK-MODY (FBG 5.5-8 mmol/L and HbA1c 5.6 - 7.6%) (PP4; internal lab contributor). Additionally, two other missense variants, c.629T>A (p.Met210Lys) and c.629T>C (p.Met210Thr), have been classified as pathogenic by the ClinGen MDEP (PM5_Strong). In summary, c.627_628delinsAG meets the criteria to be classified as likely pathogenic for monogenic diabetes. ACMG/AMP criteria applied, as specified by the ClinGen MDEP (specification version 1.1.0, approved 3/23/2023): PM5_Strong, PP2, PP4, PM2_Supporting.
Met criteria codes
PM2_Supporting
This variant is absent in gnomAD v2.1.1 (PM2_Supporting).
PP2
GCK is defined by the ClinGen MDEP as a gene that has a low rate of benign missense variation and has pathogenic missense variants as a common mechanism of disease (PP2).
PP4
This variant was identified in an individual with a clinical history highly specific for GCK-MODY (FBG 5.5-8 mmol/L and HbA1c 5.6 - 7.6%) (PP4; internal lab contributor).
PM5_Strong
Two other missense variants, c.629T>A (p.Met210Lys) and c.629T>C (p.Met210Thr), have been classified as pathogenic by the ClinGen MDEP (PM5_Strong).
Approved on: 2023-05-26
Published on: 2023-05-26
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