The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • There was no gene found in the curated document received from the VCI/VCEP
  • Gene listed was thus derived from ClinVar and/or CAR

  • See Evidence submitted by expert panel for details.

Variant: NM_000018.2(ACADVL):c.343delG (p.Glu115Lysfs)

CA220206

1624 (ClinVar)

Gene: ACADVL
Condition: very long chain acyl-CoA dehydrogenase deficiency
Inheritance Mode: Autosomal recessive inheritance
UUID: e1a7f305-d1e3-4e8b-9d38-0645f61fc98e
Approved on: 2021-11-09
Published on: 2022-04-06

HGVS expressions

NM_000018.2(ACADVL):c.343delG (p.Glu115Lysfs)
NC_000017.11:g.7220924del
CM000679.2:g.7220924del
NC_000017.10:g.7124243del
CM000679.1:g.7124243del
NC_000017.9:g.7064967del
NG_007975.1:g.6091del
NG_008391.2:g.4128del
ENST00000356839.10:c.343del
ENST00000322910.9:c.*298del
ENST00000350303.9:c.277del
ENST00000356839.9:c.343del
ENST00000543245.6:c.412del
ENST00000577191.5:n.420del
ENST00000577433.5:n.551del
ENST00000577857.5:n.293+94del
ENST00000579286.5:n.524del
ENST00000579886.2:c.202-21del
ENST00000580365.1:n.74del
ENST00000581378.5:n.42del
ENST00000581562.5:n.390del
ENST00000582056.5:n.526del
ENST00000582166.1:n.324del
ENST00000583312.5:c.343del
ENST00000584103.5:c.376del
NM_000018.3:c.343del
NM_001033859.2:c.277del
NM_001270447.1:c.412del
NM_001270448.1:c.115del
NM_000018.4:c.343del
NM_001033859.3:c.277del
NM_001270447.2:c.412del
NM_001270448.2:c.115del
NM_000018.4(ACADVL):c.343del

Pathogenic

Met criteria codes 3
PM2_Supporting PVS1 PP4
Not Met criteria codes 1
PM3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
ACADVL VCEP
The NM_000018.4(ACADVL): c.343del (p.Glu115Lysfs) variant in ACADVL is a frameshift predicted to cause a premature stop codon in biologically relevant exon 6/20 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1: PMIDs 9973285, 11590124). The highest population minor allele frequency in gnomAD v2.1.1 is 0.00004 in African population, which is lower than the ClinGen ACADVL Variant Curation Expert Panel threshold (<0.001) for PM2_Supporting, meeting this criterion (PM2_Supporting). To our knowledge, functional assays have not been reported for this variant, however it has been reported in the literature in at least four individuals with VLCADD (PP4: PMID: 7479827, 31031081, 32778825). In summary, this variant meets the criteria to be classified as pathogenic for autosomal recessive very long chain acyl-CoA dehydrogenase (VLCAD) deficiency based on the ACMG/AMP criteria applied, as specified by the ClinGen ACADVL Variant Curation Expert Panel: PVS1, PM2_supporting, PP4.)
Met criteria codes
PM2_Supporting
gnomAD frequency 0.001414%
PVS1
Frameshift exon 6/20
PP4
Assertion of VLCAD deficiency (PMID: 31031081 & 7479827)
Not Met criteria codes
PM3
One copy (p.R613W) confirmed inherited from the mother. Deletion not confirmed from father. PM3_supporting NOT applied, because (p.R613W) variant is not curated by VCEP yet.
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.