The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]

  • See Evidence submitted by expert panel for details.

Variant: NM_004333.4(BRAF):c.770A>G (p.Gln257Arg)

CA222583

13973 (ClinVar)

Gene: BRAF
Condition: cardiofaciocutaneous syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: 5f9417cc-43e4-41be-b920-ae6db397bdaa

HGVS expressions

NM_004333.4:c.770A>G
NM_004333.4(BRAF):c.770A>G (p.Gln257Arg)
NM_001354609.1:c.770A>G
NM_004333.5:c.770A>G
NR_148928.1:n.1075A>G
ENST00000288602.10:c.770A>G
ENST00000497784.1:n.805A>G
NC_000007.14:g.140801502T>C
CM000669.2:g.140801502T>C
NC_000007.13:g.140501302T>C
CM000669.1:g.140501302T>C
NC_000007.12:g.140147771T>C
NG_007873.3:g.128263A>G

Pathogenic

Met criteria codes 6
PS3 PP3 PP2 PS2_Very Strong PM1 PM2

Evidence Links 5

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
RASopathy VCEP
The c.770A>G (p.Gln257Arg) variant in BRAF has been reported in the literature as a confirmed de novo occurrence in at least 2 patients with clinical features of a RASopathy (PS2_VeryStrong; PMID:18042262, PMID:17551924, PMID:16474404). In vitro functional studies provide some evidence that the p.Q257R variant may impact protein function (PS3; PMID:18413255; PMID:19376813). This variant was absent from large population studies (PM2; ExAC, http://exac.broadinstitute.org). The variant is located in the BRAF gene, which has been defined by the ClinGen RASopathy Expert Panel as a gene with a low rate of benign missense variants and pathogenic missense variants are common (PP2; PMID:29493581). Furthermore, this variant is located in exon 6, which has been defined by the ClinGen RASopathy Expert Panel to be a mutational hotspot or domain of BRAF (PM1; PMID:29493581). Computational prediction tools and conservation analysis suggest that the p.Q257R variant may impact the protein (PP3). In summary, this variant meets criteria to be classified as pathogenic for cardio-facio-cutaneous syndrome in an autosomal dominant manner. Rasopathy-specific ACMG/AMP criteria applied (PMID:29493581): PP2, PP3, PM1, PM2, PS3, PS2_VeryStrong.
Met criteria codes
PS3
PP3
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PP2
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PS2_Very Strong
At least 2 de novo occurrences

PM1
Exon 6
PM2
Absent
Approved on: 2017-04-03
Published on: 2018-12-10
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