The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No ClinVar Id was directly found from the curated document
  • No CSPEC related information was provided by the message!

  • See Evidence submitted by expert panel for details.

Variant: NM_001354803.2:c.341_353del

CA2573106064

Gene: GCK
Condition: maturity-onset diabetes of the young type 2
Inheritance Mode: Autosomal dominant inheritance
UUID: 92d7f370-17a2-4d65-9c6d-72f8c4bf6551

HGVS expressions

NM_001354803.2:c.341_353del
NC_000007.14:g.44145217_44145229del
CM000669.2:g.44145217_44145229del
NC_000007.13:g.44184816_44184828del
CM000669.1:g.44184816_44184828del
NC_000007.12:g.44151341_44151353del
NG_008847.1:g.49197_49209del
NG_008847.2:g.57944_57956del
ENST00000395796.8:c.*1305_*1317del
ENST00000616242.5:c.*427_*439del
ENST00000683378.1:n.533_545del
ENST00000336642.9:c.341_353del
ENST00000345378.7:c.1310_1322del
ENST00000403799.8:c.1307_1319del
ENST00000671824.1:c.1370_1382del
ENST00000672743.1:n.319_331del
ENST00000673284.1:c.1307_1319del
ENST00000336642.8:n.359_371del
ENST00000345378.6:c.1310_1322del
ENST00000395796.7:c.1304_1316del
ENST00000403799.7:c.1307_1319del
ENST00000437084.1:c.1256_1268del
ENST00000459642.1:n.687_699del
ENST00000616242.4:n.1304_1316del
NM_000162.3:c.1307_1319del
NM_033507.1:c.1310_1322del
NM_033508.1:c.1304_1316del
NM_000162.4:c.1307_1319del
NM_001354800.1:c.1307_1319del
NM_001354801.1:c.296_308del
NM_001354802.1:c.167_179del
NM_001354803.1:c.341_353del
NM_033507.2:c.1310_1322del
NM_033508.2:c.1304_1316del
NM_000162.5:c.1307_1319del
NM_033507.3:c.1310_1322del
NM_033508.3:c.1304_1316del

Likely Pathogenic

Met criteria codes 2
PVS1 PM2_Supporting
Not Met criteria codes 1
PP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Monogenic Diabetes VCEP
The c.1307_1319del variant in the glucokinase gene, GCK, causes a frameshift in the protein at codon 436 (NM_000162.5), adding 174 novel amino acids before encountering a stop codon (p.(Ile436SerfsTer174)). This variant, located in exon 10 of 10, is predicted to cause loss of a stop codon and result in an elongated protein. The additional residues are expected to cause improper folding, resulting in loss of function in a gene in which loss-of-function is an established disease mechanism (PVS1; PMID 19790256). This variant is absent in gnomAD v2.1.1 (PM2_Supporting). This variant was identified in an individual with diabetes; however, PP4 is unable to be evaluated due to lack of clinical information (internal lab contributors). In summary, c.1307_1319del meets the criteria to be classified as likely pathogenic for monogenic diabetes. ACMG/AMP criteria applied, as specified by the ClinGen MDEP (specification version 1.2.0, approved 6/7/2023): PVS1, PM2_supporting.
Met criteria codes
PVS1
This variant, located in exon 10 of 10, is predicted to cause loss of a stop codon and result in an elongated protein. The additional residues are expected to cause improper folding, resulting in loss of function in a gene in which loss-of-function is an established disease mechanism (PVS1; PMID 19790256).
PM2_Supporting
This variant is absent in gnomAD v2.1.1 (PM2_Supporting).
Not Met criteria codes
PP4
This variant was identified in an individual with diabetes; however, PP4 is unable to be evaluated due to lack of clinical information (internal lab contributors).
Approved on: 2023-06-20
Published on: 2023-06-20
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.