The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No ClinVar Id was directly found from the curated document


Variant: NM_001354803.2:c.353_357dup

CA2573106102

Gene: GCK
Condition: monogenic diabetes
Inheritance Mode: Semidominant inheritance
UUID: 6f9d1dba-3acd-4e0f-96d2-36de7cff0164

HGVS expressions

NM_001354803.2:c.353_357dup
NC_000007.14:g.44145214_44145218dup
CM000669.2:g.44145214_44145218dup
NC_000007.13:g.44184813_44184817dup
CM000669.1:g.44184813_44184817dup
NC_000007.12:g.44151338_44151342dup
NG_008847.1:g.49209_49213dup
NG_008847.2:g.57956_57960dup
ENST00000395796.8:c.*1317_*1321dup
ENST00000616242.5:c.*439_*443dup
ENST00000683378.1:n.545_549dup
ENST00000336642.9:c.353_357dup
ENST00000345378.7:c.1322_1326dup
ENST00000403799.8:c.1319_1323dup
ENST00000671824.1:c.1382_1386dup
ENST00000672743.1:n.331_335dup
ENST00000673284.1:c.1319_1323dup
ENST00000336642.8:n.371_375dup
ENST00000345378.6:c.1322_1326dup
ENST00000395796.7:c.1316_1320dup
ENST00000403799.7:c.1319_1323dup
ENST00000437084.1:c.1268_1272dup
ENST00000459642.1:n.699_703dup
ENST00000616242.4:n.1316_1320dup
NM_000162.3:c.1319_1323dup
NM_033507.1:c.1322_1326dup
NM_033508.1:c.1316_1320dup
NM_000162.4:c.1319_1323dup
NM_001354800.1:c.1319_1323dup
NM_001354801.1:c.308_312dup
NM_001354802.1:c.179_183dup
NM_001354803.1:c.353_357dup
NM_033507.2:c.1322_1326dup
NM_033508.2:c.1316_1320dup
NM_000162.5:c.1319_1323dup
NM_033507.3:c.1322_1326dup
NM_033508.3:c.1316_1320dup

Pathogenic

Met criteria codes 4
PP1 PP4_Moderate PVS1 PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Monogenic Diabetes Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for GCK Version 1.2.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Monogenic Diabetes VCEP
The c.1319_1323dup variant in the glucokinase gene, GCK, causes a frameshift in the protein at codon 442 (NM_000162.5), adding 174 novel amino acids before encountering a stop codon (p.(Glu442SerfsTer174)). This variant, located in exon 10 of 10, is predicted to cause loss of a stop codon and result in an elongated protein. The additional residues are expected to cause improper folding, resulting in loss of function in a gene in which loss-of-function is an established disease mechanism (PVS1; PMID 19790256). This variant is absent in gnomAD (PM2_Supporting). This variant was identified in at least 2 individuals with a clinical history highly specific for GCK-MODY (FBG 5.5-8 mmol/L and HbA1c 5.6 - 7.6% and negative antibodies) (PP4_Moderate; internal lab contributors). This variant segregated with diabetes, with 2 informative meioses in 2 families with MODY (PP1; internal lab contributors). In summary, the c.1319_1323dup variant meets the criteria to be classified as pathogenic for monogenic diabetes. ACMG/AMP criteria applied, as specified by the ClinGen MDEP (specification version 1.2.0, approved 6/7/2023): PVS1, PM2_Supporting, PP4_Moderate, PP1.
Met criteria codes
PP1
This variant segregated with diabetes, with 2 informative meioses in 2 families with MODY (PP1; internal lab contributors).
PP4_Moderate
This variant was identified in at least 2 individuals with a clinical history highly specific for GCK-MODY (FBG 5.5-8 mmol/L and HbA1c 5.6 - 7.6% and negative antibodies) (PP4_Moderate; internal lab contributors).
PVS1
This variant, located in exon 10 of 10, is predicted to cause loss of a stop codon and result in an elongated protein. The additional residues are expected to cause improper folding, resulting in loss of function in a gene in which loss-of-function is an established disease mechanism (PVS1; PMID 19790256).
PM2_Supporting
This variant is absent in gnomAD (PM2_Supporting).
Approved on: 2023-06-25
Published on: 2023-06-25
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.