The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]

  • See Evidence submitted by expert panel for details.

Variant: NM_004333.6(BRAF):c.793G>C (p.Gly265Arg)

CA261666

44832 (ClinVar)

Gene: BRAF
Condition: RASopathy
Inheritance Mode: Autosomal dominant inheritance
UUID: 36ccb1ce-1912-4c71-8267-399b17f45c37
Approved on: 2020-07-01
Published on: 2020-07-01

HGVS expressions

NM_004333.6:c.793G>C
NM_004333.6(BRAF):c.793G>C (p.Gly265Arg)
NM_004333.4:c.793G>C
NM_001354609.1:c.793G>C
NM_004333.5:c.793G>C
NR_148928.1:n.1098G>C
NM_001354609.2:c.793G>C
NM_001374244.1:c.793G>C
NM_001374258.1:c.793G>C
ENST00000288602.10:c.793G>C
ENST00000497784.1:n.828G>C
NC_000007.14:g.140801479C>G
CM000669.2:g.140801479C>G
NC_000007.13:g.140501279C>G
CM000669.1:g.140501279C>G
NC_000007.12:g.140147748C>G
NG_007873.3:g.128286G>C
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Likely Pathogenic

Met criteria codes 6
PP2 PP3 PM1 PM2 PM6 PS4_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
RASopathy VCEP
The c.793G>C (p.Gly265Arg) variant in BRAF was absent from large population studies (PM2; gnomad.broadinstitute.org). It was observed as a de novo occurrence in one proband diagnosed with a RASopathy (PM6, PS4_Supporting; Laboratory for Molecular Medicine internal data, ClinVar SCV000061628.5). The variant is located in the BRAF gene, which has been defined by the ClinGen RASopathy Expert Panel as a gene with a low rate of benign missense variants and pathogenic missense variants are common (PP2; PMID: 29493581). Furthermore, the variant is in a location that has been defined by the ClinGen RASopathy Expert Panel to be a mutational hotspot or domain of BRAF (PM1; PMID: 29493581). Computational prediction tools and conservation analysis suggest that the p.Gly265Arg variant may impact the protein (PP3). In summary, this variant meets criteria to be classified as likely pathogenic for autosomal dominant RASopathy. RASopathy-specific ACMG/AMP criteria applied (PMID:29493581): PS4_Supporting, PM1, PM2, PM6, PP2, PP3.
Met criteria codes
PP2
BRAF is a missense-constrained gene (PMID:29493581).
PP3
REVEL 0.917. Entirely conserved in UCSC database. Alamut does not predict an impact to splicing.
PM1
Occurs in exon 6 of BRAF, which has been defined by the ClinGen RASopathy Expert Panel to be a mutational hotspot or domain of BRAF (PM1; PMID: 29493581).
PM2
Absent from both versions of gnomAD.
PM6
1 de novo case with Noonan syndrome.
PS4_Supporting
Observed in 1 proband with Noonan syndrome.
Curation History
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