The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]

  • See Evidence submitted by expert panel for details.

Variant: NM_000277.2(PAH):c.913-3C>G

CA267686

120294 (ClinVar)

Gene: PAH
Condition: phenylketonuria
Inheritance Mode: Autosomal recessive inheritance
UUID: 0aab65be-c602-49d8-8553-db9be292cef7

HGVS expressions

NM_000277.2:c.913-3C>G
NM_000277.2(PAH):c.913-3C>G
NC_000012.12:g.102846954G>C
CM000674.2:g.102846954G>C
NC_000012.11:g.103240732G>C
CM000674.1:g.103240732G>C
NC_000012.10:g.101764862G>C
NG_008690.1:g.75649C>G
NG_008690.2:g.116457C>G
NM_000277.1:c.913-3C>G
NM_001354304.1:c.913-3C>G
NM_000277.3:c.913-3C>G
ENST00000307000.7:c.898-3C>G
ENST00000549247.6:n.672-3C>G
ENST00000551114.2:n.575-3C>G
ENST00000553106.5:c.913-3C>G
ENST00000635477.1:n.74-2523C>G
ENST00000635528.1:n.425C>G

Uncertain Significance

Met criteria codes 2
PP3 PM2

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Phenylketonuria VCEP
The c.913-3C>G variant in PAH is reported Likely Pathogenic in ClinVar (see variant ID 120294) by one laboratory, which states that it was found in a PKU patient but does not provide further information to support their classification. It does not appear to have been reported in the published literature. The variant is a non-canonical splice variant in PAH; it is predicted to result in altered splicing by relevant in-silico predictors, e.g., Human Splicing Finder, dbSNV ADA score 0.9997 (PP3). It is absent from ethnically diverse control databases, including gnomAD/ExAC, 1000 Genomes, and ESP (PM2). In summary, this variant meets criteria to be classified as uncertain significance for PAH. PAH-specific ACMG/AMP criteria applied: PM2, PP3.
Met criteria codes
PP3
The variant is a non-canonical splice variant in PAH; it is predicted to result in altered splicing by relevant in-silico predictors, e.g., Human Splicing Finder, dbSNV ADA score 0.9997 (PP3)
PM2
It is absent from ethnically diverse control databases, including gnomAD/ExAC, 1000 Genomes, and ESP (PM2).
Approved on: 2019-11-08
Published on: 2019-11-08
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.