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Variant: NM_000138.5(FBN1):c.5826C>A (p.Cys1942Ter)

CA269532860

547334 (ClinVar)

Gene: FBN1
Condition: Marfan syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: 76fe5b55-7709-49dc-b27d-dfa97cef8168

HGVS expressions

NM_000138.5:c.5826C>A
NM_000138.5(FBN1):c.5826C>A (p.Cys1942Ter)
NC_000015.10:g.48445467G>T
CM000677.2:g.48445467G>T
NC_000015.9:g.48737664G>T
CM000677.1:g.48737664G>T
NC_000015.8:g.46524956G>T
NG_008805.2:g.205322C>A
ENST00000559133.6:c.5826C>A
ENST00000674301.2:c.5826C>A
ENST00000684448.1:n.4500C>A
ENST00000316623.10:c.5826C>A
ENST00000674301.1:c.825C>A
ENST00000316623.9:c.5826C>A
ENST00000537463.6:c.*1589C>A
ENST00000559133.5:c.1133C>A
NM_000138.4:c.5826C>A

Pathogenic

Met criteria codes 6
PVS1 PS4_Supporting PM6_Supporting PM2_Supporting PP1 PP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
The NM_00138 c.5826C>A, is a nonsense variant in FBN1 expected to cause a premature stop codon and likely results in an absent or disrupted protein product (PVS1). This variant was found in a proband with infantile Marfan syndrome (MFS) and was found to be de novo without confirmation of parental relationships (internal data, PP4, PM6_Supporting). This variant has been reported 7 times in ClinVar, twice as pathogenic and five times as uncertain significance (Variantion ID: 547334). At least three other probands with clinical features of MFS carry the same variant (PMID 12068374, 22772377, Centre for Human Genetics ClinVar entry, PS4_Sup). In one family with features of MFS, including mitral valve prolapse, striae, pectus carinatum, scoliosis, striae, joint hypermobility, and wrist and thumb sign, this variant was found to segregate with disease in four affected family members (PMID 12068374, PP1). This variant is not present in gnomAD (PM2_sup; https://gnomad.broadinstitute.org/ v2.1.1). In summary, this variant meets criteria to be classified as pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PVS1, PS4_Sup, PM2_Sup, PM6_Sup, PP1, PP4
Met criteria codes
PVS1
PTC at 1942, predicted to undergo NMD
PS4_Supporting
1.5 Pts
PM6_Supporting
1 de novo with phenotype consistent with gene without confirmation of parental relationships
PM2_Supporting
Absent in gnomAD
PP1
3 segregations in 1 family with high systemic score
PP4
one proband with infantile MFS, de novo without confirmation of maternity/paternity
Approved on: 2024-02-22
Published on: 2024-02-22
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