The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]

  • See Evidence submitted by expert panel for details.

Variant: NM_004333.4(BRAF):c.1741A>G (p.Asn581Asp)

CA279976

13979 (ClinVar)

Gene: BRAF
Condition: cardiofaciocutaneous syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: f2cf40e6-1706-4a5e-b2f8-b7b396ddbde2

HGVS expressions

NM_004333.4:c.1741A>G
NM_004333.4(BRAF):c.1741A>G (p.Asn581Asp)
NM_001354609.1:c.1741A>G
NM_004333.5:c.1741A>G
NR_148928.1:n.2046A>G
ENST00000288602.10:c.1741A>G
ENST00000479537.5:n.25A>G
ENST00000496384.6:n.564A>G
ENST00000497784.1:n.1776A>G
NC_000007.14:g.140754187T>C
CM000669.2:g.140754187T>C
NC_000007.13:g.140453987T>C
CM000669.1:g.140453987T>C
NC_000007.12:g.140100456T>C
NG_007873.3:g.175578A>G

Pathogenic

Met criteria codes 6
PP3 PP2 PM2 PM1 PM6_Strong PS3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
RASopathy VCEP
The c.1741A>G (p.Asn581Asp) variant in BRAF has been reported in the literature as a non-maternity/paternity confirmed de novo occurrence in at least 2 patients with clinical features of a RASopathy (PM6_Strong; PMID 25463315). In vitro functional studies provide some evidence that the p.Asn581Asp variant may impact protein function (PS3; 19376813, 16474404). This variant was absent from large population studies (PM2; ExAC, http://exac.broadinstitute.org). The variant is located in the BRAF gene, which has been defined by the ClinGen RASopathy Expert Panel as a gene with a low rate of benign missense variants and pathogenic missense variants are common (PP2; PMID 29493581). Furthermore, this variant is located in the catalytic loop of BRAF (PM1; 16474404, 29493581). Computational prediction tools and conservation analysis suggest that the p.Asn581Asp variant may impact the protein (PP3). In summary, this variant meets criteria to be classified as pathogenic for RASopathies in an autosomal dominant manner. Rasopathy-specific ACMG/AMP criteria applied (PMID:29493581): PP2, PP3, PM1, PM2, PM6_Strong, PS3.
Met criteria codes
PP3
Computational prediction tools and conservation analysis suggest that the p.N581D variant may impact the protein (PP3).
PP2
The variant is located in the BRAF gene, which has been defined by the ClinGen RASopathy Expert Panel as a gene with low rate of benign missense with missense variants commonly being pathogenic (PP2; PMID 29493581)
PM2
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM1
Furthermore, this variant is located in the catalytic loop of BRAF (PM1; 16474404, 29493581).
PM6_Strong
The p.N581D variant in BRAF has been reported in the literature as a non-maternity/paternity confirmed de novo occurrence in at least 2 patients with clinical features of a RASopathy (PM6_S; PMID 25463315).
PS3
In vitro functional studies provide some evidence that the p.N581D variant may impact protein function (PS3; 19376813, 16474404).
Approved on: 2017-04-03
Published on: 2018-12-10
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