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Variant: NM_000018.4(ACADVL):c.953C>T (p.Pro318Leu)

CA287437583

439361 (ClinVar)

Gene: ACADVL
Condition: very long chain acyl-CoA dehydrogenase deficiency
Inheritance Mode: Autosomal recessive inheritance
UUID: 63b1baed-bb7f-4c9b-9848-53ed2dccbb2c

HGVS expressions

NM_000018.4:c.953C>T
NM_000018.4(ACADVL):c.953C>T (p.Pro318Leu)
NC_000017.11:g.7222741C>T
CM000679.2:g.7222741C>T
NC_000017.10:g.7126060C>T
CM000679.1:g.7126060C>T
NC_000017.9:g.7066784C>T
NG_007975.1:g.7908C>T
NG_008391.2:g.2310G>A
ENST00000356839.10:c.953C>T
ENST00000322910.9:c.*908C>T
ENST00000350303.9:c.887C>T
ENST00000356839.9:c.953C>T
ENST00000543245.6:c.1022C>T
ENST00000578824.5:n.102C>T
ENST00000581378.5:n.671C>T
ENST00000582379.1:n.337C>T
NM_000018.3:c.953C>T
NM_001033859.2:c.887C>T
NM_001270447.1:c.1022C>T
NM_001270448.1:c.725C>T
NM_001033859.3:c.887C>T
NM_001270447.2:c.1022C>T
NM_001270448.2:c.725C>T

Likely Pathogenic

Met criteria codes 4
PP4_Moderate PP3 PM2_Supporting PM3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
ACADVL VCEP
The c.953C>T variant in ACADVL is a missense variant predicted to cause substitution of proline by leucine at amino acid 318 (p.Pro318Leu). This variant has been described in an individual with increased C14:1 acylcarnitine and fibroblasts derived from this individual showed a significantly reduced VLCAD enzyme activity, which is highly specific for very long chain acyl-CoA dehydrogenase (VLCAD) deficiency (PP4_moderate, PMID: 10529389). This individual also carried a pathogenic nonsense variant on the opposite chromosome (PM3). This variant is absent from gnomAD v2.1.1 (PM2_Supporting). The computational predictor REVEL gives a score of 0.947, which is above the threshold of 0.75, evidence that correlates with impact to ACADVL function (PP3). In summary, this variant meets the criteria to be classified as likely pathogenic for autosomal recessive VLCAD deficiency based on the ACMG/AMP criteria applied, as specified by the ClinGen ACADVL Variant Curation Expert Panel: PP4_moderate, PM3, PM2_Supporting, PP3 (ACADVL VCEP specifications version 1; approved November 8, 2021).
Met criteria codes
PP4_Moderate
This variant has been described in an individual with increased C14:1 acylcarnitine and fibroblasts derived from this individual showed a significantly reduced VLCAD enzyme activity, which is highly specific for very long chain acyl-CoA dehydrogenase (VLCAD) deficiency (PP4_moderate, PMID: 10529389).
PP3
The computational predictor REVEL gives a score of 0.947, which is above the threshold of 0.75, evidence that correlates with impact to ACADVL function (PP3).
PM2_Supporting
This variant is absent from gnomAD v2.1.1 (PM2_Supporting).
PM3
Confirmed in trans by cloning to p.Tyr398Ter (provisional pathogenic)
Approved on: 2022-12-14
Published on: 2022-12-14
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