The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_001042723.2:c.7879G>C

CA308113474

1330358 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia of anesthesia
Inheritance Mode: Autosomal dominant inheritance
UUID: 0c3403c9-ad8c-4ff9-a507-eb439eecc9ca
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_001042723.2:c.7879G>C
NC_000019.10:g.38502923G>C
CM000681.2:g.38502923G>C
NC_000019.9:g.38993563G>C
CM000681.1:g.38993563G>C
NC_000019.8:g.43685403G>C
NG_008866.1:g.74224G>C
ENST00000599547.6:n.7879G>C
ENST00000359596.8:c.7879G>C
ENST00000355481.8:c.7879G>C
ENST00000359596.7:n.7879G>C
ENST00000360985.7:c.7876G>C
ENST00000594335.5:n.1331G>C
NM_000540.2:c.7879G>C
NM_001042723.1:c.7879G>C
NM_000540.3:c.7879G>C
NM_000540.3(RYR1):c.7879G>C (p.Val2627Leu)

Likely Pathogenic

The Expert Panel has overridden the computationally generated classification - "Uncertain Significance - Insufficient Evidence"
Met criteria codes 3
PP3_Moderate PS4_Moderate PP1_Strong
Not Met criteria codes 2
BP4 PM1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of valine with 2627 at codon leucine of the RYR1 protein, p.(Val2627Leu). The maximum allele frequency for this variant among the six major gnomAD populations is NFE: 0.000065, a frequency consistent with pathogenicity for MHS. This variant has been reported in three unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, all of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Moderate (The UK (Leeds) MH Unit). This variant segregates with MHS in seven individuals, PP1_Strong (The UK (Leeds) MH Unit). No functional studies were identified for this variant. This variant does not reside in a hotspot for pathogenic variants that contribute to MHS. A REVEL score >0.85 (0.894) supports a pathogenic, PP3_Moderate. This variant has been classified as Likey Pathogenic. Criteria implemented: PS4_Moderate, PP1_Strong, PP3_Moderate.
Met criteria codes
PP3_Moderate
A REVEL score >0.85 (0.894) supports a pathogenic, PP3_Moderate.
PS4_Moderate
This variant has been reported in three unrelated individuals who have a personal or family history of a malignant hyperthermia reaction, all of these individuals had a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Moderate (The UK (Leeds) MH Unit).
PP1_Strong
This variant segregates with MHS in seven individuals, PP1_Strong (The UK (Leeds) MH Unit).
Not Met criteria codes
BP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM1
This variant does not reside in a hotspot for pathogenic variants that contribute to MHS.
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