The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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  • See Evidence submitted by expert panel for details.

Variant: NM_001042723.2:c.1834G>C

CA308125185

1210299 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia, susceptibility to, 1
Inheritance Mode: Autosomal dominant inheritance
UUID: ceabf681-53b5-48bd-b1a7-05f2cf146e6d

HGVS expressions

NM_001042723.2:c.1834G>C
NC_000019.10:g.38457539G>C
CM000681.2:g.38457539G>C
NC_000019.9:g.38948179G>C
CM000681.1:g.38948179G>C
NC_000019.8:g.43640019G>C
NG_008866.1:g.28840G>C
ENST00000599547.6:n.1834G>C
ENST00000359596.8:c.1834G>C
ENST00000355481.8:c.1834G>C
ENST00000359596.7:n.1834G>C
ENST00000360985.7:c.1834G>C
NM_000540.2:c.1834G>C
NM_001042723.1:c.1834G>C
NM_000540.3:c.1834G>C
NM_000540.3(RYR1):c.1834G>C (p.Ala612Pro)

Uncertain Significance

Met criteria codes 3
PP1 PS4_Supporting PP3_Moderate
Not Met criteria codes 3
BA1 BS1 BP4

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of alanine with proline at codon 612 of the RYR1 protein, p.Ala612Pro. This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in an individual with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Supporting (PMID:22415532). No functional studies were identified for this variant. This variant does not reside in a hotspot for pathogenic variants that contribute to MHS. This variant segregates with MHS in 3 individuals, PP1 (PMID:22415532). A REVEL score >0.85 (0.971) supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PS4_Supporting, PP1, PP3_Moderate.
Met criteria codes
PP1
This variant segregates with MHS in 3 individuals, PP1_Supporting (PMID:22415532).
PS4_Supporting
This variant has been reported in an individual with a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (if the proband was unavailable for testing, a positive diagnostic test result in a mutation-positive relative was counted), PS4_Supporting (PMID:22415532).
PP3_Moderate
A REVEL score >0.85 (0.971) supports a pathogenic status for this variant, PP3_Moderate.
Not Met criteria codes
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Approved on: 2023-04-06
Published on: 2023-04-06
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