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Variant: NM_000018.4(ACADVL):c.507_527del (p.Met169_Gly175del)

CA312294

203597 (ClinVar)

Gene: ACADVL
Condition: very long chain acyl-CoA dehydrogenase deficiency
Inheritance Mode: Autosomal recessive inheritance
UUID: 187501cc-93fb-4525-8ff0-1e7e358dccad

HGVS expressions

NM_000018.4:c.507_527del
NM_000018.4(ACADVL):c.507_527del (p.Met169_Gly175del)
NC_000017.11:g.7221567_7221587del
CM000679.2:g.7221567_7221587del
NC_000017.10:g.7124886_7124906del
CM000679.1:g.7124886_7124906del
NC_000017.9:g.7065610_7065630del
NG_007975.1:g.6734_6754del
NG_008391.2:g.3473_3493del
ENST00000356839.10:c.507_527del
ENST00000322910.9:c.*462_*482del
ENST00000350303.9:c.441_461del
ENST00000356839.9:c.507_527del
ENST00000543245.6:c.576_596del
ENST00000577191.5:n.584_604del
ENST00000577433.5:n.715_735del
ENST00000577857.5:n.323_343del
ENST00000579286.5:n.688_708del
ENST00000579886.2:c.345_365del
ENST00000580365.1:n.238_258del
ENST00000581378.5:c.225_245del
ENST00000581562.5:n.525-385_525-365del
ENST00000582166.1:n.488_508del
ENST00000583312.5:c.507_527del
ENST00000583760.1:n.289_309del
NM_000018.3:c.507_527del
NM_001033859.2:c.441_461del
NM_001270447.1:c.576_596del
NM_001270448.1:c.279_299del
NM_001033859.3:c.441_461del
NM_001270447.2:c.576_596del
NM_001270448.2:c.279_299del

Uncertain Significance

Met criteria codes 3
PP4_Moderate PM4 PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
ACADVL VCEP
The NM_000018.4 c.507_527del (p.Met169_Gly175del) variant in ACADVL is an in-frame deletion (removes amino acids Met169_Gly175) in exon7/20 that is not predicted to impact splicing (SpliceAI: 0.0200). The highest population minor allele frequency in gnomAD v4.0.0 is 0.0001 in Middle Eastern population, which is lower than the ClinGen ACADVL Variant Curation Expert Panel threshold (<0.001) for PM2_Supporting, meeting this criterion (PM2_Supporting). The c.507_527del variant is predicted to cause a change in the length of the protein (p. Met169_Gly175del) due to an in-frame deletion of seven amino acids in a non-repeat region (PM4). This variant is reported in the literature in two individuals affected with very long-chain acyl-CoA dehydrogenase deficiency in a heterozygous fashion, who displayed elevated C14:1 carnitine level (0.8 and 1.14 µmol/L, respectively) during newborn screening and reduced VLCAD enzyme levels in the latter one of them, which is highly specific for VLCAD deficiency (PP4_Moderate, PMID: 31031081). Due to limited evidence, this variant is classified as a variant of uncertain significance for autosomal recessive very long chain acyl-CoA dehydrogenase (VLCAD) deficiency based on the ACMG/AMP criteria applied, as specified by the ClinGen ACADVL Variant Curation Expert Panel: PM2_Supporting, PM4, PP4_Moderate (ACADVL VCEP specifications version 1; approved November 9, 2021).
Met criteria codes
PP4_Moderate
This variant is reported in the literature in two individuals affected with very long-chain acyl-CoA dehydrogenase deficiency in a heterozygous fashion, who displayed elevated C14:1 carnitine level (0.8 and 1.14 µmol/L, respectively) during newborn screening and reduced VLCAD enzyme levels in the latter one of them, which is highly specific for VLCAD deficiency (PP4_Moderate, PMID: 31031081).
PM4
The c.507_527del variant is predicted to cause a change in the length of the protein (p. Met169_Gly175del) due to an in-frame deletion of seven amino acids in a non-repeat region (PM4).
PM2_Supporting
VCEP cut off met.
Approved on: 2024-02-27
Published on: 2024-02-27
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