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Variant: NM_000138.5(FBN1):c.338C>G (p.Ser113Cys)

CA353680

222600 (ClinVar)

Gene: FBN1
Condition: Marfan syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: 42715a92-75d4-4f3b-8f17-e17ee816b367
Approved on: 2023-12-29
Published on: 2023-12-29

HGVS expressions

NM_000138.5:c.338C>G
NM_000138.5(FBN1):c.338C>G (p.Ser113Cys)
NC_000015.10:g.48610736G>C
CM000677.2:g.48610736G>C
NC_000015.9:g.48902933G>C
CM000677.1:g.48902933G>C
NC_000015.8:g.46690225G>C
NG_008805.2:g.40053C>G
ENST00000316623.10:c.338C>G
ENST00000316623.9:c.338C>G
ENST00000537463.6:c.338C>G
NM_000138.4:c.338C>G
More

Likely Pathogenic

Met criteria codes 5
PM1 PP2 PP4 PS4_Moderate PM2_Supporting
Not Met criteria codes 1
PP3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
The NM_00138 c.338C>G is a missense variant in FBN1 predicted to cause a substitution of a tyrosine by cysteine at amino acid 113 (p. Ser113Cys) within an EGF-like domain of the protein. Cysteine residues are believed to be involved in the formation of disulfide bridges which are essential for the protein structure and this variant may impact disulfide bonding (PM1). This variant was found in a proband with thoracic aortic aneurysm and ectopia lentis, which is a highly specific phenotype for Marfan syndrome (Internal data, PP4). This variant has been reported twice in ClinVar: once as likely pathogenic and once as uncertain significance (Variation ID: 222600). It has been reported in the literature in individuals with a clinical diagnosis or clinical features of Marfan syndrome (PMID 34281902, Invitae Clinvar entry, Blueprint Genetics ClinVar entry, internal data, PS4_Mod). This variant is not present in gnomAD (PM2_sup; https://gnomad.broadinstitute.org/ v2.1.1). Computational prediction tools and conservation analysis are inconclusive with regards to a possible impact on this variant protein function and structure (REVEL: 0.384). The constraint z-score for missense variants affecting FBN1 is 5.06 (PP2). In summary, this variant meets criteria to be classified as likely pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PS4_Mod, PM1, PM2_Sup, PP2, PP4
Met criteria codes
PM1
Creating a Cys residue in an EGF-like domain
PP2
z-score is 5.06
PP4
Internal Lab- 1 proband with ectopia lentis and thoracic aortic aneurysm
PS4_Moderate
2 points total
PM2_Supporting
Absent in gnomAD
Not Met criteria codes
PP3
REVEL: 0.384
Curation History
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