The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC related information was provided by the message!
  • No CSPEC computer assertion could be determined for this classification!

  • See Evidence submitted by expert panel for details.

Variant: NM_000138.5(FBN1):c.7016G>A (p.Cys2339Tyr)

CA392330332

495644 (ClinVar)

Gene: FBN1
Condition: Marfan syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: ecfd14b5-e2a8-4834-968a-2c45a7922949
Approved on: 2024-08-22
Published on: 2024-08-22

HGVS expressions

NM_000138.5:c.7016G>A
NM_000138.5(FBN1):c.7016G>A (p.Cys2339Tyr)
NC_000015.10:g.48427755C>T
CM000677.2:g.48427755C>T
NC_000015.9:g.48719952C>T
CM000677.1:g.48719952C>T
NC_000015.8:g.46507244C>T
NG_008805.2:g.223034G>A
ENST00000559133.6:c.7078G>A
ENST00000674301.2:c.*529G>A
ENST00000682170.1:n.1197G>A
ENST00000682767.1:n.313G>A
ENST00000316623.10:c.7016G>A
ENST00000674301.1:c.2182G>A
ENST00000316623.9:c.7016G>A
ENST00000559133.5:c.2385G>A
NM_000138.4:c.7016G>A

Likely Pathogenic

Met criteria codes 6
PS4_Supporting PP3 PP2 PM2_Supporting PM5 PM1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
NM_00138 c. 7016G>A is a missense variant in FBN1 predicted to cause a substitution of cysteine by tyrosine at amino acid 2339 (p.Cys2339Tyr). This variant has been identified in one individual with clinical features of Marfan syndrome (PS4_Sup). This variant has been reported 1 time in ClinVar as Likely pathogenic and 1 time as uncertain significance (VariationID:495644).This variant is not present in gnomAD (PM2_Sup; https://gnomad.broadinstitute.org/ v4.0.0). This variant affects a cysteine residue in a TB domain. Cysteine residues are believed to be involved in the formation of disulfide bridges which are essential for the protein structure (PM1). The constraint z-score for missense variants affecting FBN1 is 8.18 (PP2; https://gnomad.broadinstitute.org/ v4.0.0). Computational prediction tools and conservation analysis suggest that this variant may impact the protein (REVEL: 0.992, PP3). In summary, this variant meets criteria to be classified as likely pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PM1, PM5, PS4_Sup, PM2_Sup, PP2, PP3.
Met criteria codes
PS4_Supporting
One patient is reported with ocular features such as ectopia lentis, flat corneas and arachnodactyly (PMID 12203992)
PP3
REVEL score: 0.973
PP2
No benign criteria. The constraint z-score for missense variants affecting FBN1 is 5.06.
PM2_Supporting
Absent in gnomAD
PM5
Alternate variants : p.Cys2339Arg, p.Cys2339Gly, p.Cys2339Ser. p.Cys2339Ser: This variant is a likely pathogenic variant (PP3, PS4_Supp (https://doi.org/10.1093/ehjcr/ytac063), PP2, PM2_Supp, PM1_Moderate).
PM1
Cys disrupting residue in a TB7 like domain
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.