The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC related information was provided by the message!
  • No CSPEC computer assertion could be determined for this classification!

  • See Evidence submitted by expert panel for details.

Variant: NM_000018.4(ACADVL):c.640T>G (p.Phe214Val)

CA397723367

541723 (ClinVar)

Gene: ACADVL
Condition: very long chain acyl-CoA dehydrogenase deficiency
Inheritance Mode: Autosomal recessive inheritance
UUID: fc3e0337-b77f-45dd-b981-d8aa90235408
Approved on: 2024-04-26
Published on: 2024-04-26

HGVS expressions

NM_000018.4:c.640T>G
NM_000018.4(ACADVL):c.640T>G (p.Phe214Val)
NC_000017.11:g.7221969T>G
CM000679.2:g.7221969T>G
NC_000017.10:g.7125288T>G
CM000679.1:g.7125288T>G
NC_000017.9:g.7066012T>G
NG_007975.1:g.7136T>G
NG_008391.2:g.3082A>C
ENST00000356839.10:c.640T>G
ENST00000322910.9:c.*595T>G
ENST00000350303.9:c.574T>G
ENST00000356839.9:c.640T>G
ENST00000543245.6:c.709T>G
ENST00000577191.5:n.717T>G
ENST00000577857.5:n.456T>G
ENST00000579286.5:n.821T>G
ENST00000580365.1:n.371T>G
ENST00000581378.5:c.358T>G
ENST00000581562.5:n.542T>G
ENST00000582379.1:n.24T>G
ENST00000583312.5:c.655T>G
ENST00000583760.1:n.422T>G
NM_000018.3:c.640T>G
NM_001033859.2:c.574T>G
NM_001270447.1:c.709T>G
NM_001270448.1:c.412T>G
NM_001033859.3:c.574T>G
NM_001270447.2:c.709T>G
NM_001270448.2:c.412T>G

Uncertain Significance

Met criteria codes 3
PP3 PM1 PM2_Supporting

Evidence Links 1

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
ACADVL VCEP
The NM_000018.4: c.640T>G (p.Phe214Val) in ACADVL is a missense variant predicted to cause substitution of phenylalanine by valine at amino acid 214 (p.Phe214Val). The highest population minor allele frequency in gnomAD v2.1.1 is 0.000009 in Non-Finnish European population, which is lower than the ClinGen ACADVL Variant Curation Expert Panel threshold (<0.001) for PM2_Supporting, meeting this criterion (PM2_Supporting). This variant has been reported in the literature in five individuals with an abnormal newborn screen who are apparently heterozygous carriers for the variant (PMID: 26385305), but this information is insufficient to use toward classification. This variant resides within a region, amino acids 214–223, of ACADVL that is defined as a mutational hotspot and critical functional domain by the ClinGen ACADVL Variant Curation Expert Panel (PMIDs: 20060901, 9973285; PM1). The computational predictor REVEL gives a score of 0.916, which is above the threshold of 0.75, evidence that correlates with impact to ACADVL function (PP3). Due to limited evidence, this variant is classified as a variant of uncertain significance for autosomal recessive very long chain acyl-CoA dehydrogenase (VLCAD) deficiency based on the ACMG/AMP criteria applied, as specified by the ClinGen ACADVL Variant Curation Expert Panel: PM1, PM2_Supporting, PP3 (ACADVL VCEP specifications version 1; approved November 9, 2021).
Met criteria codes
PP3
The computational predictor REVEL gives a score of 0.916, which is above the threshold of 0.75, evidence that correlates with impact to ACADVL function (PP3).
PM1
This variant resides within a region, amino acids 214–223, of ACADVL that is defined as a mutational hotspot and critical functional domain by the ClinGen ACADVL Variant Curation Expert Panel (PMIDs: 20060901, 9973285; PM1).

PM2_Supporting
The highest population minor allele frequency in gnomAD v2.1.1 is 0.000009 in Non-Finnish European population, which is lower than the ClinGen ACADVL Variant Curation Expert Panel threshold (<0.001) for PM2_Supporting.
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.