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Variant: NM_000540.2(RYR1):c.14186A>C (p.His4729Pro)

CA405684225

590447 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia of anesthesia
Inheritance Mode: Autosomal dominant inheritance
UUID: 7a6f9182-612c-4259-8200-acb7b5bf70aa
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_000540.2:c.14186A>C
NM_000540.2(RYR1):c.14186A>C (p.His4729Pro)
NC_000019.10:g.38577931A>C
CM000681.2:g.38577931A>C
NC_000019.9:g.39068571A>C
CM000681.1:g.39068571A>C
NC_000019.8:g.43760411A>C
NG_008866.1:g.149232A>C
ENST00000593677.2:n.1122A>C
ENST00000688602.1:n.2519A>C
ENST00000689936.1:n.2491A>C
ENST00000359596.8:c.14186A>C
ENST00000355481.8:c.14171A>C
ENST00000359596.7:n.14186A>C
ENST00000360985.7:c.14168A>C
NM_001042723.1:c.14171A>C
NM_000540.3:c.14186A>C
NM_001042723.2:c.14171A>C
NM_000540.3(RYR1):c.14186A>C (p.His4729Pro)

Uncertain Significance

Met criteria codes 1
PM1_Supporting
Not Met criteria codes 4
PS3 PS4 BP4 PP3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of histidine with proline at codon 4729 of the RYR1 protein, p.(His4729Pro). This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in one individual with a personal or family history of a malignant hyperthermia reaction, this individual had a second variant in RYR1, p.(Arg3167*). This individual did not have a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result, PS4 was not met (PMID: 26951757). No functional studies were identified for this variant. This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Sup (PMID: 21118704). A REVEL score of 0.758 supports neither a pathogenic nor a benign status for this variant. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PM1_Supporting.
Met criteria codes
PM1_Supporting
This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Sup (PMID: 21118704).
Not Met criteria codes
PS3
No functional studies were identified for this variant.
PS4
This variant has been reported in one individual with a personal or family history of a malignant hyperthermia reaction, this individual had a second variant in RYR1, p.(Arg3167*). This individual did not have a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result, PS4 was not met (PMID: 26951757).
BP4
A REVEL score of 0.758 supports neither a pathogenic nor a benign status for this variant.
PP3
A REVEL score of 0.758 supports neither a pathogenic nor a benign status for this variant.
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