The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_001042723.2:c.9850T>A

CA405692341

1330368 (ClinVar)

Gene: RYR1
Condition: malignant hyperthermia of anesthesia
Inheritance Mode: Autosomal dominant inheritance
UUID: adbfc5e4-20fa-44d7-bfb9-f26f6b795db5
Approved on: 2023-04-06
Published on: 2023-04-06

HGVS expressions

NM_001042723.2:c.9850T>A
NC_000019.10:g.38517523T>A
CM000681.2:g.38517523T>A
NC_000019.9:g.39008163T>A
CM000681.1:g.39008163T>A
NC_000019.8:g.43700003T>A
NG_008866.1:g.88824T>A
ENST00000599547.6:n.9789T>A
ENST00000359596.8:c.9850T>A
ENST00000355481.8:c.9850T>A
ENST00000359596.7:n.9850T>A
ENST00000360985.7:c.9847T>A
ENST00000594335.5:n.3252T>A
ENST00000599547.5:n.657T>A
NM_000540.2:c.9850T>A
NM_001042723.1:c.9850T>A
NM_000540.3:c.9850T>A
NM_000540.3(RYR1):c.9850T>A (p.Trp3284Arg)

Uncertain Significance

Met criteria codes 1
PP3_Moderate
Not Met criteria codes 2
PS4 PM1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
Malignant Hyperthermia Susceptibility VCEP
This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of tryptophan with arginine at codon 3284 of the RYR1 protein, p.(Trp3284Arg). This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported in an individual without a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT), PS4 was not implemented (PMID:21455645). No functional studies were identified for this variant. This variant does not reside in a hotspot for pathogenic variants that contribute to MHS. A REVEL score >0.85 (0.873) supports a pathogenic status for this variant, PP3_Moderate. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PP3_Moderate.
Met criteria codes
PP3_Moderate
A REVEL score >0.85 (0.873) supports a pathogenic status for this variant, PP3_Moderate.
Not Met criteria codes
PS4
This variant has been reported in an individual without a personal or family history of an MH episode and a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT), PS4 was not implemented (PMID:21455645).
PM1
This variant does not reside in a hotspot for pathogenic variants that contribute to MHS.
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