The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]


Variant: NM_000448.3(RAG1):c.2442G>T (p.Glu814Asp)

CA5950260

418449 (ClinVar)

Gene: RAG1
Condition: recombinase activating gene 1 deficiency
Inheritance Mode: Autosomal recessive inheritance
UUID: cfafc8ac-46c0-4aff-a6b0-3e969310fc93
Approved on: 2024-02-26
Published on: 2024-02-26

HGVS expressions

NM_000448.3:c.2442G>T
NM_000448.3(RAG1):c.2442G>T (p.Glu814Asp)
NC_000011.10:g.36575746G>T
CM000673.2:g.36575746G>T
NC_000011.9:g.36597296G>T
CM000673.1:g.36597296G>T
NC_000011.8:g.36553872G>T
NG_007528.1:g.12734G>T
ENST00000697713.1:c.2442G>T
ENST00000697714.1:c.2442G>T
ENST00000697715.1:c.2442G>T
ENST00000299440.6:c.2442G>T
ENST00000299440.5:c.2442G>T
ENST00000524423.1:n.357C>A
ENST00000534663.1:c.2442G>T
NM_000448.2:c.2442G>T
NM_001377277.1:c.2442G>T
NM_001377278.1:c.2442G>T
NM_001377279.1:c.2442G>T
NM_001377280.1:c.2442G>T

Uncertain Significance

Met criteria codes 2
PM2_Supporting PM1_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Severe Combined Immunodeficiency Disease Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for RAG1 Version 1.0.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Severe Combined Immunodeficiency Disease VCEP
NM_000448.3(RAG1):c.2442G>T is a missense variant predicted to cause substitution of Glutamic Acid by Aspartic Acid at amino acid 814 (p.Glu814Asp). This missense variant is located in the core domain (amino acids 387-1011) (PM1_Supporting). The filtering allele frequency (the upper threshold of the 95% CI of 3/44724) of the c.2442G>T variant in RAG1 is 0.00001779 for Admixed American chromosomes by gnomAD v4, which is lower than the ClinGen SCID VCEP threshold (<0.000102) for PM2_Supporting, and therefore meets this criterion (PM2_Supporting). In summary, this variant meets the criteria to be classified as a variant of uncertain significance for autosomal recessive severe combined immunodeficiency due to RAG1 deficiency based on the ACMG/AMP criteria applied, as specified by the ClinGen SCID VCEP: PM1_Supporting,PM2_Supporting(VCEP specifications version 1).
Met criteria codes
PM2_Supporting
The filtering allele frequency (the upper threshold of the 95% CI of 3/44724) of the c.2442G>T variant in RAG1 is 0.00001779 for Admixed American chromosomes by gnomAD v4, which is lower than the ClinGen SCID VCEP threshold (<0.000102) for PM2_Supporting, and therefore meets this criterion (PM2_Supporting).
PM1_Supporting
This missense variant is located in the core domain (amino acids 387-1011) (PM1_Supporting).
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.