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Variant: NM_000018.4(ACADVL):c.1368dup (p.Ile457fs)

CA624860703

661308 (ClinVar)

Gene: ACADVL
Condition: very long chain acyl-CoA dehydrogenase deficiency
Inheritance Mode: Autosomal recessive inheritance
UUID: d70ed59e-acff-4edf-bfac-6197cb1fd486

HGVS expressions

NM_000018.4:c.1368dup
NM_000018.4(ACADVL):c.1368dup (p.Ile457fs)
NC_000017.11:g.7224003dup
CM000679.2:g.7224003dup
NC_000017.10:g.7127322dup
CM000679.1:g.7127322dup
NC_000017.9:g.7068046dup
NG_007975.1:g.9170dup
NG_008391.2:g.1048dup
NG_033038.1:g.15542dup
ENST00000356839.10:c.1368dup
ENST00000322910.9:c.*1323dup
ENST00000350303.9:c.1302dup
ENST00000356839.9:c.1368dup
ENST00000542255.6:n.226dup
ENST00000543245.6:c.1437dup
ENST00000578711.1:n.499dup
ENST00000579425.5:n.484dup
ENST00000579546.1:n.205dup
ENST00000579894.5:n.79dup
ENST00000583074.5:n.87dup
ENST00000583850.5:n.143dup
ENST00000583858.5:n.397dup
ENST00000585203.6:n.559dup
NM_000018.3:c.1368dup
NM_001033859.2:c.1302dup
NM_001270447.1:c.1437dup
NM_001270448.1:c.1140dup
NM_001033859.3:c.1302dup
NM_001270447.2:c.1437dup
NM_001270448.2:c.1140dup

Likely Pathogenic

The Expert Panel has overridden the computationally generated classification - "Uncertain Significance - Insufficient Evidence"
Met criteria codes 2
PM2_Supporting PVS1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
ACADVL VCEP
The c.1368dup (p.Ile457fs) also known as (p.Ile457HisfsTer6) variant in ACADVL is a frameshift variant predicted to cause a premature stop codon in biologically-relevant-exon14/20 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1; PMIDs 9973285, 11590124). At least one individual with this variant was identified by newborn screen, but this information is insufficient for to use toward classification (PMID: 26385305). The highest population minor allele frequency in gnomAD v2.1.1 is 0.00001549 in the European (non-Finnish) population, which is lower than the ClinGen ACADVL Variant Curation Expert Panel threshold (<0.001) for PM2_Supporting, meeting this criterion (PM2_Supporting). In summary, this variant meets the criteria to be classified as likely pathogenic for autosomal recessive VLCAD deficiency based on the ACMG/AMP criteria applied, as specified by the ClinGen ACADVL Variant Curation Expert Panel: PVS1, PM2_Supporting (VCEP specifications version1; approved November 8, 2021)
Met criteria codes
PM2_Supporting
This variant is absent from gnomAD v2.1.1 (PM2_Supporting).
PVS1
The c.1368dup (p.Ile457fs) also known as (p.Ile457HisfsTer6) variant in ACADVL is a frameshift variant predicted to cause a premature stop codon in biologically-relevant-exon14/20 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1; PMIDs 9973285, 11590124).
Approved on: 2022-12-14
Published on: 2022-12-14
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