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Variant: NM_000138.5(FBN1):c.3632_3634del (p.Phe1211del)

CA658824437

549178 (ClinVar)

Gene: FBN1
Condition: Marfan syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: 60c5b002-3ac2-4df2-8ded-86171378b2f5
Approved on: 2023-09-28
Published on: 2023-09-28

HGVS expressions

NM_000138.5:c.3632_3634del
NM_000138.5(FBN1):c.3632_3634del (p.Phe1211del)
NC_000015.10:g.48485454_48485456del
CM000677.2:g.48485454_48485456del
NC_000015.9:g.48777651_48777653del
CM000677.1:g.48777651_48777653del
NC_000015.8:g.46564943_46564945del
NG_008805.2:g.165335_165337del
ENST00000684448.1:n.2306_2308del
ENST00000316623.10:c.3632_3634del
ENST00000316623.9:c.3632_3634del
ENST00000537463.6:c.637-10804_637-10802del
NM_000138.4:c.3632_3634del

Likely Pathogenic

Met criteria codes 3
PM2_Supporting PS4 PM4
Not Met criteria codes 6
BS1 BP4 BP1 BA1 PP3 PP2

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
The NM_00138 c.3632_3634del is an in-frame deletion in FBN1predicted to cause a deletion of a phenylalanine at position 1211 (p.Phe1211del). This variant was found in a proband with a clinical diagnosis of Marfan syndrome (internal data, University of Ghent) (PP4). This variant was also found in a proband with ectopia lentis and an adverse aortic event and was found to segregate with the disease in two affected family members (internal data, University of Tokyo) (PP1). It has been reported in the literature in two unrelated individuals with ectopia lentis (PMID 19159394, 16222657), in one individual with a clinical diagnosis of Marfan syndrome (Ambry Genetics ClinVarentry) and in two unrelated individuals with thoracic aortic aneurysm and/or dissection (PMID 37042257, 33059708) (PS4). This variant is not present in gnomAD(PM2_sup; https://gnomad.broadinstitute.org/). This variant is located in a non-repeat region in a cbEGF-like domain of the protein (PM4). The variant in FBN1 has been reported three times in ClinVar as likely pathogenic (Variation ID: 549178). In summary, this variant meets criteria to be classified as likely pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PS4, PM4, PM2_Sup, PP1, PP4.
Met criteria codes
PM2_Supporting
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PS4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PM4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
Not Met criteria codes
BS1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP4
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BP1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
BA1
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PP3
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
PP2
No code specific comments provided, please refer to the summary above or general recommendations provided in the guideline
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