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Variant: NM_000018.4(ACADVL):c.799_802del (p.Val267fs)

CA8337855

371635 (ClinVar)

Gene: ACADVL
Condition: very long chain acyl-CoA dehydrogenase deficiency
Inheritance Mode: Autosomal recessive inheritance
UUID: fdb3b9ad-0137-4b6a-a1b6-1620fb377156

HGVS expressions

NM_000018.4:c.799_802delGTTA
NM_000018.4:c.799_802del
NM_000018.4(ACADVL):c.799_802del (p.Val267fs)
NC_000017.11:g.7222223_7222226del
CM000679.2:g.7222223_7222226del
NC_000017.10:g.7125542_7125545del
CM000679.1:g.7125542_7125545del
NC_000017.9:g.7066266_7066269del
NG_007975.1:g.7390_7393del
NG_008391.2:g.2826_2829del
ENST00000356839.10:c.799_802del
ENST00000322910.9:c.*754_*757del
ENST00000350303.9:c.733_736del
ENST00000356839.9:c.799_802del
ENST00000543245.6:c.868_871del
ENST00000577191.5:n.971_974del
ENST00000581378.5:n.517_520del
ENST00000582379.1:n.183_186del
NM_000018.3:c.799_802del
NM_001033859.2:c.733_736del
NM_001270447.1:c.868_871del
NM_001270448.1:c.571_574del
NM_001033859.3:c.733_736del
NM_001270447.2:c.868_871del
NM_001270448.2:c.571_574del

Pathogenic

Met criteria codes 4
PVS1 PM2_Supporting PM3 PP4_Moderate

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
ACADVL VCEP
The NM_000018.4(ACADVL):c.799_802del (p.Val267GlnfsTer8) variant in ACADVL is a frameshift variant predicted cause a premature stop codon in biologically-relevant-exon 9/20 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1; PMIDs 9973285, 11590124). The highest population minor allele frequency in gnomAD v2.1.1 is 0.000003978 in general population, which is lower than the ClinGen ACADVL Variant Curation Expert Panel threshold (<0.001) for PM2_Supporting, meeting this criterion (PM2_Supporting). This variant has been detected in two individuals with very long chain acyl CoA dehydrogenase (VLCAD) deficiency, of whom both were homozygous for the variant (PM3 score = 1.0, PM3, PMIDs: 27995075, 9973285). Patients with this variant displayed abnormal NBS and follow-up acylcarnitine profiles, and/or non-detectable ACADVL transcript by northern blot analysis, which is highly specific for very long chain acyl CoA dehydrogenase (VLCAD) deficiency (PP4, PMIDs: 27995075, 9973285). In summary, this variant meets the criteria to be classified as pathogenic for autosomal recessive very long chain acyl-CoA dehydrogenase (VLCAD) deficiency based on the ACMG/AMP criteria applied, as specified by the ClinGen ACADVL Variant Curation Expert Panel: PVS1, PM2_Supporting, PM3, PP4.
Met criteria codes
PVS1
The NM_000018.4(ACADVL):c.799_802del (p.Val267GlnfsTer8) variant in ACADVL is a frameshift variant predicted cause a premature stop codon in biologically-relevant-exon 9/20 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1; PMIDs 9973285, 11590124).
PM2_Supporting
The highest population minor allele frequency in gnomAD v2.1.1 is 0.000003978 in general population, which is lower than the ClinGen ACADVL Variant Curation Expert Panel threshold (<0.001) for PM2_Supporting, meeting this criterion (PM2_Supporting).
PM3
This variant has been detected in two individuals with very long chain acyl CoA dehydrogenase (VLCAD) deficiency, of whom both were homozygous for the variant (PM3 score = 1.0, PM3, PMIDs: 27995075, 9973285).
PP4_Moderate
Patients with this variant displayed abnormal NBS and follow-up acylcarnitine profiles, and/or non-detectable ACADVL transcript by northern blot analysis, which is highly specific for very long chain acyl CoA dehydrogenase (VLCAD) deficiency (PP4, PMIDs: 27995075, 9973285).
Approved on: 2023-06-27
Published on: 2023-06-27
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