The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • No ClinVar Id was directly found from the curated document


Variant: NM_000419.5:c.1771dup

CA915940334

Gene: ITGA2B
Condition: Glanzmann thrombasthenia
Inheritance Mode: Autosomal recessive inheritance
UUID: 59b6d07d-2891-455f-864a-b6ecdc0e1550

HGVS expressions

NM_000419.5:c.1771dup
NC_000017.11:g.44379798dup
CM000679.2:g.44379798dup
NC_000017.10:g.42457166dup
CM000679.1:g.42457166dup
NC_000017.9:g.39812692dup
NG_008331.1:g.14710dup
ENST00000262407.6:c.1771dup
ENST00000648408.1:n.1202dup
ENST00000262407.5:c.1771dup
ENST00000592462.5:n.566dup
NM_000419.3:c.1771dup
NM_000419.4:c.1771dup

Pathogenic

Met criteria codes 3
PVS1 PM2_Supporting PP4_Strong
Not Met criteria codes 1
PM3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Platelet Disorders Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines Version 2.1

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Platelet Disorders VCEP
NM_000419.5(ITGA2B):c.1771dup in exon 18 is a frameshift variant predicted to cause p.(p.Asp591GlyfsTer47), with a premature stop codon in exon 19/30 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1). At least two patient (GT31 in PMID: 25728920 and the patient in PMID: 17488698) with this variant displayed mucocutaneous bleeding and impaired aggregation with all agonists except ristocetin, which is highly specific for Glanzmann thrombasthenia. Additionally, αIIbβ3 surface expression was reduced to <5%, as measured by flow cytometry (PP4_strong). This variant is absent from gnomAD v2.1.1 (PM2_Supporting). In summary this variant meets criteria to be classified as Pathogenic for autosomal recessive Glanzmann Thrombasthenia based on the ACMG/AMP criteria applied, as specified by the ClinGen PD VCEP: PVS1, PP4_strong, PM2_supporting. (VCEP specifications version 2.1).
Met criteria codes
PVS1
NM_000419.5(ITGA2B):c.1771dup in exon 18 is a frameshift variant predicted to cause p.(p.Asp591GlyfsTer47), with a premature stop codon in exon 19/30 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1).
PM2_Supporting
This variant is absent from gnomAD v2.1.1 (PM2_Supporting).
PP4_Strong
At least two patient (GT31 in PMID: 25728920 and the patient in PMID: 17488698) with this variant displayed mucocutaneous bleeding and impaired aggregation with all agonists except ristocetin, which is highly specific for Glanzmann thrombasthenia. Additionally, αIIbβ3 surface expression was reduced to <5%, as measured by flow cytometry. ITGA2B and ITGB3 were sequenced across all exons and intron/exon boundaries. (PP4_strong)
Not Met criteria codes
PM3
GT31 (PMID: 25728920) is compound heterozygous for c.1771dup and c.3061-1G>A. Confirmation of trans phase was not reported. The patient reported in PMID: 17488698 is compound heterozygous for c.1771dup and His813Asn. Variants are confirmed in trans by independent segregation in patient's daughters. Not considered here to avoid circularity.
Approved on: 2022-08-05
Published on: 2022-12-07
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.