The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
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Variant: NM_000138.5:c.4149_4154del

CA915940949

Gene: FBN1
Condition: Marfan syndrome
Inheritance Mode: Autosomal dominant inheritance
UUID: e49d82e2-1bb3-4b2e-a018-5f4410263915
Approved on: 2022-12-01
Published on: 2022-12-01

HGVS expressions

NM_000138.5:c.4149_4154del
NC_000015.10:g.48474311_48474316del
CM000677.2:g.48474311_48474316del
NC_000015.9:g.48766508_48766513del
CM000677.1:g.48766508_48766513del
NC_000015.8:g.46553800_46553805del
NG_008805.2:g.176473_176478del
ENST00000684448.1:n.2823_2828del
ENST00000316623.10:c.4149_4154del
ENST00000316623.9:c.4149_4154del
ENST00000537463.6:c.821_826del
NM_000138.4:c.4149_4154del

Pathogenic

Met criteria codes 5
PS2 PP4 PM1 PM4 PM2_Supporting
Not Met criteria codes 14
BS2 BS3 BS1 PVS1 PS3 PS4 BP4 BP1 BP3 PP3 PP2 BA1 PM6 PM3

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
FBN1 VCEP
NM00138 c.4149_4154del is a deletion predicted to remove the methionine and glycine at amino acid positions 1384 and 1385, respectively, but is not expected to impact the reading frame (PM4). This variant was found to be confirmed as de novo in a young child with a clinical diagnosis of Marfan syndrome (PP4 and PS2; Universitair Ziekenhuis Antwerpen). This variant is not present in gnomAD v2.1.1 (PM2_supporting). p.Gly1385 is known to be involved in interdomain packaging of the protein, and its deletion may disrupt protein structure and/or function (PM1). This variant has not been reported in the published literature or public databases. In summary, this variant meets criteria to be classified as pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PS2, PM1, PM4, PP4, PM2_supporting.
Met criteria codes
PS2
One proband with aortic dilatation + features of a connective tissue disorder (UZA)- confirmed de novo
PP4
One proband with Marfan syndrome (UZA)
PM1
Deletion of p.Gly1385 (interdomain packaging)
PM4
in-frame deletion of 2 amino acids
PM2_Supporting
absent from gnomAD v2.1.1 and v3.1.2
Not Met criteria codes
BS2
n/a for FBN1
BS3
no publications in HGMD or Mastermind
BS1
PM2_supporting met
PVS1
n/a - variant type
PS3
no publications in HGMD or Mastermind
PS4
no publications in HGMD or Mastermind
BP4
not missense, no predicted impact to splicing
BP1
n/a for FBN1
BP3
n/a for FBN1
PP3
not missense, no predicted impact to splicing
PP2
n/a - variant type
BA1
PM2_supporting met
PM6
PS2 met
PM3
n/a for FBN1
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