The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]

  • See Evidence submitted by expert panel for details.

Variant: NM_000018.4(ACADVL):c.552del (p.Ile184fs)

CA915949503

650581 (ClinVar)

Gene: ACADVL
Condition: very long chain acyl-CoA dehydrogenase deficiency
Inheritance Mode: Autosomal recessive inheritance
UUID: addf7e6b-b165-4167-ab71-eb43108fe949

HGVS expressions

NM_000018.4:c.552del
NM_000018.4(ACADVL):c.552del (p.Ile184fs)
NC_000017.11:g.7221612del
CM000679.2:g.7221612del
NC_000017.10:g.7124931del
CM000679.1:g.7124931del
NC_000017.9:g.7065655del
NG_007975.1:g.6779del
NG_008391.2:g.3439del
ENST00000356839.10:c.552del
ENST00000322910.9:c.*507del
ENST00000350303.9:c.486del
ENST00000356839.9:c.552del
ENST00000543245.6:c.621del
ENST00000577191.5:n.629del
ENST00000577433.5:n.760del
ENST00000577857.5:n.368del
ENST00000579286.5:n.733del
ENST00000579886.2:c.390del
ENST00000580365.1:n.283del
ENST00000581378.5:n.270del
ENST00000581562.5:n.525-340del
ENST00000582166.1:n.533del
ENST00000583312.5:c.552del
ENST00000583760.1:n.334del
NM_000018.3:c.552del
NM_001033859.2:c.486del
NM_001270447.1:c.621del
NM_001270448.1:c.324del
NM_001033859.3:c.486del
NM_001270447.2:c.621del
NM_001270448.2:c.324del

Pathogenic

Met criteria codes 4
PM3_Supporting PP4_Moderate PVS1 PM2_Supporting

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specifications for this VCEP
Evidence submitted by expert panel
ACADVL VCEP
The NM_000018.4(ACADVL):c.552del (p.Ile184fs) variant in ACADVL is a frameshift variant predicted to cause a premature stop codon in biologically-relevant-exon 8/20 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism ((PVS1; PMIDs 9973285, 11590124). At least one patient with this variant displayed Newborn Screening and follow-up data, which is highly specific for VLCAD. Specifically, a proband with this variant was identified via newborn screening to have C14:1 uM levels of 2.99 and asserted abnormal plasma acylcarnitine levels (PP4; PMID 24503138). This variant has been detected in at least 1 individual with very long chain acyl CoA dehydrogenase (VLCAD) deficiency. This individual is a compound heterozygous for the variant and a pathogenic variant (p.V283A) although the variants are not confirmed in trans. Based on ACADVL VCEP specific guidelines, a total of 0.5 points is awarded for criteria PM3 (PMID 24503138). This variant is absent from gnomAD v2.2.1 (PM2_Supporting). In summary, this variant meets the criteria to be classified as pathogenic for autosomal recessive very long chain acyl-CoA dehydrogenase (VLCAD) deficiency based on the ACMG/AMP criteria applied, as specified by the ClinGen ACADVL Variant Curation Expert Panel: PVS1, PP4_moderate, PM3_supporting, PS2_supporting.) VCEP classification criteria version 2, 10/15/21.
Met criteria codes
PM3_Supporting
This variant has been detected in at least 1 individual with very long chain acyl CoA dehydrogenase (VLCAD) deficiency. This individual is a compound heterozygous for the variant and a pathogenic variant (p.V283A) although the variants are not confirmed in trans. Based on ACADVL VCEP specific guidelines, a total of 0.5 points is awarded for this criteria. [PMID 24503138]
PP4_Moderate
At least one patient with this variant displayed NBS and follow-up data, which is highly specific for VLCAD. Specifically, a proband with this variant was found via newborn screening to have C14:1 uM levels of 2.99 and asserted abnormal plasma acylcarnitine levels. It is noted that a second NBS of this proband was also documented (C14:1 uM 0.36, PAC 5.60). [PMID 24503138]
PVS1
The c.552del (p.Ile184fs) variant in ACADVL is a frameshift variant predicted to cause a premature stop codon in biologically-relevant-exon 8/20 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1; PMIDs 9973285, 11590124).
PM2_Supporting
This variant is absent from gnomAD v2.2.1 (PM2_Supporting)
Approved on: 2022-03-14
Published on: 2022-03-14
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